Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005591.1 Kokia drynarioides strain JFW-HI SEQ_119716, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14649
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34


Found at i:5531 original size:15 final size:15

Alignment explanation


    Indices: 5513--5551  Score: 51
    Period size: 15  Copynumber: 2.6  Consensus size: 15

       5503 GAAACCCAGT

                      *    
       5513 ATGAAGATGATGATG
          1 ATGAAGATGACGATG

                   *       
       5528 ATGAAGAAGACGATG
          1 ATGAAGATGACGATG

                *    
       5543 ATGATGATG
          1 ATGAAGATG

       5552 TCATGATCAT


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.41, C:0.03, G:0.33, T:0.23


Consensus pattern (15 bp):   
ATGAAGATGACGATG

Found at i:5542 original size:18 final size:18

Alignment explanation


    Indices: 5515--5549  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       5505 AACCCAGTAT

                 *            
       5515 GAAGATGATGATGATGAA
          1 GAAGACGATGATGATGAA

                             
       5533 GAAGACGATGATGATGA
          1 GAAGACGATGATGATGA

       5550 TGTCATGATC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.43, C:0.03, G:0.34, T:0.20


Consensus pattern (18 bp):   
GAAGACGATGATGATGAA
Done.