Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005594.1 Kokia drynarioides strain JFW-HI SEQ_119722, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1697
ACGTcount: A:0.38, C:0.11, G:0.09, T:0.42


Found at i:1441 original size:13 final size:13

Alignment explanation


    Indices: 1419--1451  Score: 50
    Period size: 13  Copynumber: 2.6  Consensus size: 13

       1409 CGTCGTATTT

                         
       1419 TAAT-AATAAAAG
          1 TAATAAATAAAAG

                         
       1431 TAATAAATAAAAG
          1 TAATAAATAAAAG

              *     
       1444 TAGTAAAT
          1 TAATAAAT

       1452 TTTAAAAAAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  12    4  0.21
  13   15  0.79

ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27


Consensus pattern (13 bp):   
TAATAAATAAAAG
Done.