Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01005601.1 Kokia drynarioides strain JFW-HI SEQ_119735, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51053
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.34
Found at i:602 original size:4 final size:4
Alignment explanation
Indices: 582--647 Score: 71
Period size: 4 Copynumber: 16.2 Consensus size: 4
572 AACACATTAC
* * * *
582 CTTT CTTT CCTT C-TT CTTT CTTT CTTCT CCTT CTTC CTTT CTTT CCTT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTT-T CTTT CTTT CTTT CTTT CTTT
630 CTTTT CTTT CTTT CTTT C
1 C-TTT CTTT CTTT CTTT C
648 CCGTTTATTT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
3 3 0.06
4 43 0.83
5 6 0.12
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (4 bp):
CTTT
Found at i:631 original size:25 final size:25
Alignment explanation
Indices: 595--647 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
585 TCTTTCCTTC
*
595 TTCTTTCTTTCTTCTCCTTCTTCCT
1 TTCTTTCCTTCTTCTCCTTCTTCCT
* * *
620 TTCTTTCCTTCTTTTCTTTCTTTCT
1 TTCTTTCCTTCTTCTCCTTCTTCCT
645 TTC
1 TTC
648 CCGTTTATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (25 bp):
TTCTTTCCTTCTTCTCCTTCTTCCT
Found at i:642 original size:17 final size:17
Alignment explanation
Indices: 582--643 Score: 81
Period size: 17 Copynumber: 3.5 Consensus size: 17
572 AACACATTAC
582 CTTTCTTTCCTTCTTCTTT
1 CTTTCTTTCCTTC-T-TTT
*
601 CTTTCTTCTCCTTC-TTC
1 CTTTCTT-TCCTTCTTTT
618 CTTTCTTTCCTTCTTTT
1 CTTTCTTTCCTTCTTTT
635 CTTTCTTTC
1 CTTTCTTTC
644 TTTCCCGTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
16 6 0.15
17 20 0.51
19 7 0.18
20 6 0.15
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (17 bp):
CTTTCTTTCCTTCTTTT
Found at i:5660 original size:30 final size:30
Alignment explanation
Indices: 5624--5773 Score: 116
Period size: 30 Copynumber: 5.1 Consensus size: 30
5614 GAAAAGGTAA
5624 TTTTGGAAAAATTAGGGTTAAAAATGGAAT
1 TTTTGGAAAAATTAGGGTTAAAAATGGAAT
* * *
5654 TTTTGG--AAGTTCGGAGGT--AAATGGTAAT
1 TTTTGGAAAAATTAGG-GTTAAAAATGG-AAT
* * **
5682 TTTTGGAAAAATCAAGGCCAAAAATGGAAT
1 TTTTGGAAAAATTAGGGTTAAAAATGGAAT
**
5712 TTTTGG-AAGTTTAGGG-T-AAAATGGTAATT
1 TTTTGGAAAAATTAGGGTTAAAAATGG-AA-T
* *
5741 TTTTTGAAAAATTAGGGTCAAAAATGGAAT
1 TTTTGGAAAAATTAGGGTTAAAAATGGAAT
5771 TTT
1 TTT
5774 CGAATGTCTA
Statistics
Matches: 91, Mismatches: 18, Indels: 22
0.69 0.14 0.17
Matches are distributed among these distances:
27 13 0.14
28 17 0.19
29 15 0.16
30 31 0.34
31 8 0.09
32 7 0.08
ACGTcount: A:0.38, C:0.03, G:0.24, T:0.35
Consensus pattern (30 bp):
TTTTGGAAAAATTAGGGTTAAAAATGGAAT
Found at i:5740 original size:28 final size:28
Alignment explanation
Indices: 5596--5743 Score: 90
Period size: 28 Copynumber: 5.2 Consensus size: 28
5586 AAAAATGTTT
* *
5596 TTTTTGGAAGTTTGGGGGGAAAA-GGTAA
1 TTTTTGGAAGTTT-AGGGTAAAATGGTAA
**
5624 -TTTTGGAAAAATTAGGGTTAAAAATGG-AA
1 TTTTTGG-AAGTTTAGGG-T-AAAATGGTAA
**
5653 TTTTTGGAAGTTCGGAGGT-AAATGGTAA
1 TTTTTGGAAGTTTAG-GGTAAAATGGTAA
* ** **
5681 TTTTTGGAAAAATCAAGGCCAAAAATGG-AA
1 TTTTTGG--AAGTTTAGG-GTAAAATGGTAA
5711 TTTTTGGAAGTTTAGGGTAAAATGGTAA
1 TTTTTGGAAGTTTAGGGTAAAATGGTAA
5739 TTTTT
1 TTTTT
5744 TTGAAAAATT
Statistics
Matches: 89, Mismatches: 19, Indels: 24
0.67 0.14 0.18
Matches are distributed among these distances:
27 22 0.25
28 26 0.29
29 12 0.13
30 23 0.26
31 6 0.07
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.34
Consensus pattern (28 bp):
TTTTTGGAAGTTTAGGGTAAAATGGTAA
Found at i:5803 original size:59 final size:58
Alignment explanation
Indices: 5553--5808 Score: 243
Period size: 58 Copynumber: 4.4 Consensus size: 58
5543 ACATTTGAGA
* * * * *** **
5553 GTAAAATGGTAATTTTTGAAAAAAATCGAGATCAAAAATGTTTTTTTTGGAAGTTTGGGG
1 GTAAAATGGTAATTTTTGGAAAAATTAG-GGTCAAAAATGGAATTTTTGGAAG-TTAAGG
* * **
5613 GGAAAA-GGTAA-TTTTGGAAAAATTAGGGTTAAAAATGGAATTTTTGGAAGTTCGGAG
1 GTAAAATGGTAATTTTTGGAAAAATTAGGGTCAAAAATGGAATTTTTGGAAGTTAAG-G
* * * *
5670 GT-AAATGGTAATTTTTGGAAAAATCAAGGCCAAAAATGGAATTTTTGGAAGTTTAGG
1 GTAAAATGGTAATTTTTGGAAAAATTAGGGTCAAAAATGGAATTTTTGGAAGTTAAGG
* *
5727 GTAAAATGGTAATTTTTTTGAAAAATTAGGGTCAAAAATGGAA-TTTTCGAATGTCTAAGG
1 GTAAAATGGTAA-TTTTTGGAAAAATTAGGGTCAAAAATGGAATTTTTGGAA-GT-TAAGG
5787 GTAAAAAT-GTAATTTTTGGAAA
1 GT-AAAATGGTAATTTTTGGAAA
5809 GTTCGATGTT
Statistics
Matches: 164, Mismatches: 24, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
56 7 0.04
57 29 0.18
58 66 0.40
59 42 0.26
60 15 0.09
61 5 0.03
ACGTcount: A:0.39, C:0.04, G:0.24, T:0.34
Consensus pattern (58 bp):
GTAAAATGGTAATTTTTGGAAAAATTAGGGTCAAAAATGGAATTTTTGGAAGTTAAGG
Found at i:5850 original size:30 final size:30
Alignment explanation
Indices: 5782--5951 Score: 159
Period size: 30 Copynumber: 5.7 Consensus size: 30
5772 TTCGAATGTC
* *
5782 TAAGGGTAAAAATGTAATTTTTGGA-AAGTT
1 TAAGGGTTAAAATATAA-TTTTGGAGAAGTT
** * *
5812 CGA-TGTTAAAATATAAATTTGGAGAAGTT
1 TAAGGGTTAAAATATAATTTTGGAGAAGTT
* *
5841 TAGGGGTTAAAATATAATTTTGGAGAAATT
1 TAAGGGTTAAAATATAATTTTGGAGAAGTT
5871 TAAGGGTTAAAATATAATTTTGGA-ACTA-TT
1 TAAGGGTTAAAATATAATTTTGGAGA--AGTT
** * *
5901 TGGGGGTTAAAATGTAATTTTGGAAAAGTT
1 TAAGGGTTAAAATATAATTTTGGAGAAGTT
* *
5931 TAAGGGTCAAAATATGATTTT
1 TAAGGGTTAAAATATAATTTT
5952 TGGATAGTTT
Statistics
Matches: 113, Mismatches: 21, Indels: 12
0.77 0.14 0.08
Matches are distributed among these distances:
28 6 0.05
29 17 0.15
30 88 0.78
31 2 0.02
ACGTcount: A:0.39, C:0.02, G:0.22, T:0.37
Consensus pattern (30 bp):
TAAGGGTTAAAATATAATTTTGGAGAAGTT
Found at i:6731 original size:40 final size:40
Alignment explanation
Indices: 6686--6803 Score: 236
Period size: 40 Copynumber: 3.0 Consensus size: 40
6676 CCTTTCTTTT
6686 TCCTTTTTATTTTGTAAAACCTATGCTTAAATCCTTTAAA
1 TCCTTTTTATTTTGTAAAACCTATGCTTAAATCCTTTAAA
6726 TCCTTTTTATTTTGTAAAACCTATGCTTAAATCCTTTAAA
1 TCCTTTTTATTTTGTAAAACCTATGCTTAAATCCTTTAAA
6766 TCCTTTTTATTTTGTAAAACCTATGCTTAAATCCTTTA
1 TCCTTTTTATTTTGTAAAACCTATGCTTAAATCCTTTA
6804 GGTTTTATTG
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.29, C:0.18, G:0.05, T:0.48
Consensus pattern (40 bp):
TCCTTTTTATTTTGTAAAACCTATGCTTAAATCCTTTAAA
Found at i:7779 original size:17 final size:17
Alignment explanation
Indices: 7756--7848 Score: 123
Period size: 17 Copynumber: 5.4 Consensus size: 17
7746 ACATTTATTT
*
7756 ATTTAAATTTATAATAA
1 ATTTAAATTTAAAATAA
*
7773 TTTTAAATTTAAAAATAA
1 ATTTAAATTT-AAAATAA
* *
7791 ATTTAAACTTAAATTAA
1 ATTTAAATTTAAAATAA
7808 ATTTAAATTTAAAATAA
1 ATTTAAATTTAAAATAA
* *
7825 ATTTATATTTAAAACAA
1 ATTTAAATTTAAAATAA
7842 ATTTAAA
1 ATTTAAA
7849 AAGGGTCCGG
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
17 51 0.78
18 14 0.22
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (17 bp):
ATTTAAATTTAAAATAA
Found at i:7783 original size:6 final size:6
Alignment explanation
Indices: 7756--7837 Score: 73
Period size: 6 Copynumber: 14.2 Consensus size: 6
7746 ACATTTATTT
* ** *
7756 ATTTAA ATTTATA A--TAA TTTTAA ATTTAA AAATAA ATTTAA ACTTAA
1 ATTTAA ATTTA-A ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
* *
7803 A-TTAA ATTTAA ATTTAA A-ATAA ATTTAT ATTTAA A
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA A
7838 ACAAATTTAA
Statistics
Matches: 60, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
4 1 0.02
5 11 0.18
6 46 0.77
7 2 0.03
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (6 bp):
ATTTAA
Found at i:7834 original size:23 final size:23
Alignment explanation
Indices: 7788--7837 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
7778 AATTTAAAAA
*
7788 TAAATTTAAACTTAAATTAAATT
1 TAAATTTAAACATAAATTAAATT
*
7811 TAAATTTAAA-ATAAATTTATATT
1 TAAATTTAAACATAAA-TTAAATT
7834 TAAA
1 TAAA
7838 ACAAATTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 4 0.17
23 20 0.83
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (23 bp):
TAAATTTAAACATAAATTAAATT
Found at i:8483 original size:49 final size:48
Alignment explanation
Indices: 8297--9025 Score: 457
Period size: 49 Copynumber: 14.9 Consensus size: 48
8287 ATAAGGTTCA
** * ** * * * *
8297 CCGTTGCGATTTAAACCTTTCCCTTTGTGTCTTTGAGGTACCGGATCCG
1 CCGTTGCGGCTTAAATCTTTCCCTTCAT-TCTTCGTGGTACTGGATTCG
* * * *
8346 TCGTTGCGGCTTAGATCTTTCCCTTCATGTC-TCTGAGGTACAAGG-TTCG
1 CCGTTGCGGCTTAAATCTTTCCCTTCAT-TCTTC-GTGGTAC-TGGATTCG
* ** * * * * *
8395 CCATTATGACTTAAACCCTTCCCTTCGTGTCTTCGTGGTACTGGATCCG
1 CCGTTGCGGCTTAAATCTTTCCCTTCAT-TCTTCGTGGTACTGGATTCG
* * * *
8444 CCGTTGCGGCTTAGATCTTTCTCTTCATATCTTCATGGTACTGGATTCA
1 CCGTTGCGGCTTAAATCTTTCCCTTCAT-TCTTCGTGGTACTGGATTCG
* *
8493 CCGCTACGGCTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGATTCG
1 CCGTTGCGGCTTAAATCTTTCCCTTCAT-TCTTCGTGGTACTGGATTCG
* * * * * *
8542 CTGTTACGACTTAGATCTTTCCCTTCATGTCTTCGTGATACTGGATCCG
1 CCGTTGCGGCTTAAATCTTTCCCTTCAT-TCTTCGTGGTACTGGATTCG
* * * *
8591 CCGTTGCGGCTTAAATCTTTCTCTTCATGTCTTTGAGGTACAAGG-TTCG
1 CCGTTGCGGCTTAAATCTTTCCCTTCAT-TCTTCGTGGTAC-TGGATTCG
* * * * * * * *
8640 CCATTGTGACTTAAACCTTTCCTTTTATGTCTTCGCGGTATTGGA-TCTG
1 CCGTTGCGGCTTAAATCTTTCCCTTCAT-TCTTCGTGGTACTGGATTC-G
* ** *
8689 CCGTTGCGGCTTAAATCTTTCCCTTCATGCTAAG-GATGTACAAGG-TTCG
1 CCGTTGCGGCTTAAATCTTTCCCTTCATTCTTCGTG--GTAC-TGGATTCG
** * * *
8738 CCGTTGCAACTTAAACCCTTCCCTTTATTTCGTT-GTGGTACTGGATTCG
1 CCGTTGCGGCTTAAATCTTTCCCTTCA-TTC-TTCGTGGTACTGGATTCG
** *** *
8787 CCGTTGCGGCTTAAATCTTTCCCTCTTGTATCTTTACGGTACTGGATCCG
1 CCGTTGCGGCTTAAATCTTTCCCT-TCAT-TCTTCGTGGTACTGGATTCG
* * * * *
8837 TCGTTGCGGCTTAGATCTTTCCCTTCATGCTTCTGAGGTACAAGG-TTCG
1 CCGTTGCGGCTTAAATCTTTCCCTTCATTCTTC-GTGGTAC-TGGATTCG
* * * * * *
8886 CCGTTGCGACTTAAACCCTTCCCTTTATTTTGTTGTGGTACTGGATTCG
1 CCGTTGCGGCTTAAATCTTTCCCTTCATTCT-TCGTGGTACTGGATTCG
* * * ** ** *
8935 CTGTTGCTGCTTAAATATTTCCCTCTTGTATCTTTATGGTACTGGATCCG
1 CCGTTGCGGCTTAAATCTTTCCCT-TCAT-TCTTCGTGGTACTGGATTCG
* *
8985 CCGTTGCGGCTTATATCTTTCCCTTCATGCTTCGTGGTACT
1 CCGTTGCGGCTTAAATCTTTCCCTTCATTCTTCGTGGTACT
9026 AAGAGCTGTA
Statistics
Matches: 520, Mismatches: 136, Indels: 49
0.74 0.19 0.07
Matches are distributed among these distances:
47 1 0.00
48 27 0.05
49 396 0.76
50 92 0.18
51 4 0.01
ACGTcount: A:0.15, C:0.26, G:0.20, T:0.39
Consensus pattern (48 bp):
CCGTTGCGGCTTAAATCTTTCCCTTCATTCTTCGTGGTACTGGATTCG
Found at i:8575 original size:98 final size:98
Alignment explanation
Indices: 8297--9025 Score: 509
Period size: 98 Copynumber: 7.4 Consensus size: 98
8287 ATAAGGTTCA
** * ** * * * * * *
8297 CCGTTGCGATTTAAACCTTTCCCTTTGTGTCTTTGAGGTACCGGATCCGTCGTTGCGGCTTAGAT
1 CCGTTGCGGCTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAGAT
* *
8362 CTTTCCCTTCATGTCTCTGA-GGTACAAGG-TTCG
66 CTTTCCCTTCATGTCT-TCATGGTAC-TGGATTCG
* ** * * * * * *
8395 CCATTATGACTTAAACCCTTCCCTTCGTGTCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGAT
1 CCGTTGCGGCTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAGAT
* * *
8460 CTTTCTCTTCATATCTTCATGGTACTGGATTCA
66 CTTTCCCTTCATGTCTTCATGGTACTGGATTCG
* * * *
8493 CCGCTACGGCTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGATTCGCTGTTACGACTTAGAT
1 CCGTTGCGGCTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAGAT
* * *
8558 CTTTCCCTTCATGTCTTCGTGATACTGGATCCG
66 CTTTCCCTTCATGTCTTCATGGTACTGGATTCG
* * * * * * *
8591 CCGTTGCGGCTTAAATCTTTCTCTTCATGTCTTTGAGGTACAAGG-TTCGCCATTGTGACTTAAA
1 CCGTTGCGGCTTAAATCTTTCCCTTCATGTCTTCGTGGTAC-TGGATTCGCCGTTGCGACTTAGA
* * * ** *
8655 CCTTTCCTTTTATGTCTTCGCGGTATTGGA-TCTG
65 TCTTTCCCTTCATGTCTTCATGGTACTGGATTC-G
** * *
8689 CCGTTGCGGCTTAAATCTTTCCCTTCATG-CTAAG-GATGTACAAGG-TTCGCCGTTGCAACTTA
1 CCGTTGCGGCTTAAATCTTTCCCTTCATGTCTTCGTG--GTAC-TGGATTCGCCGTTGCGACTTA
* * * * * *
8751 AACCCTTCCCTTTATTTCGTT-GTGGTACTGGATTCG
63 GATCTTTCCCTTCATGTC-TTCATGGTACTGGATTCG
* *** * * *
8787 CCGTTGCGGCTTAAATCTTTCCC-TCTTGTATCTTTACGGTACTGGATCCGTCGTTGCGGCTTAG
1 CCGTTGCGGCTTAAATCTTTCCCTTCATG--TCTTCGTGGTACTGGATTCGCCGTTGCGACTTAG
*
8851 ATCTTTCCCTTCATG-CTTC-TGAGGTACAAGG-TTCG
64 ATCTTTCCCTTCATGTCTTCAT--GGTAC-TGGATTCG
* * * * * * * *
8886 CCGTTGCGACTTAAACCCTTCCCTTTAT-TTTGTTGTGGTACTGGATTCGCTGTTGCTG-CTTAA
1 CCGTTGCGGCTTAAATCTTTCCCTTCATGTCT-TCGTGGTACTGGATTCGCCGTTGC-GACTTAG
* * * *
8949 ATATTTCCC-TCTTGTATCTTTATGGTACTGGATCCG
64 ATCTTTCCCTTCATG--TCTTCATGGTACTGGATTCG
*
8985 CCGTTGCGGCTTATATCTTTCCCTTCATG-CTTCGTGGTACT
1 CCGTTGCGGCTTAAATCTTTCCCTTCATGTCTTCGTGGTACT
9026 AAGAGCTGTA
Statistics
Matches: 505, Mismatches: 100, Indels: 52
0.77 0.15 0.08
Matches are distributed among these distances:
96 1 0.00
97 21 0.04
98 376 0.74
99 96 0.19
100 9 0.02
101 2 0.00
ACGTcount: A:0.15, C:0.26, G:0.20, T:0.39
Consensus pattern (98 bp):
CCGTTGCGGCTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGATTCGCCGTTGCGACTTAGAT
CTTTCCCTTCATGTCTTCATGGTACTGGATTCG
Found at i:8631 original size:147 final size:145
Alignment explanation
Indices: 8297--9025 Score: 551
Period size: 147 Copynumber: 5.0 Consensus size: 145
8287 ATAAGGTTCA
* * * * * *
8297 CCGTTGCGATTTAAACCTTTCCCTTTGTGTCTTTGAGGTACCGGATCCGTCGTTGCGGCTTAGAT
1 CCGTTGCGACTTAAACCTTTCCCTTTATGTCTTTGAGGTACTGGATTCGCCGTTGCGGCTTAAAT
* * * ** * * * *
8362 CTTTCCCTTCATGTC-TCTGAGGTACAAGG-TTCGCCATTATGACTTAAACCCTTCCCTTCGTGT
66 CTTTCCCTTCATGTCTTC-GCGGTAC-TGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG-
*
8425 CTTCGTGGTACTGGATCCG
128 CTTCGTGATACTGG-TCCG
* * * * * * * * * *
8444 CCGTTGCGGCTTAGATCTTTCTCTTCATATC-TTCATGGTACTGGATTCACCGCTACGGCTTAAA
1 CCGTTGCGACTTAAACCTTTCCCTTTATGTCTTTGA-GGTACTGGATTCGCCGTTGCGGCTTAAA
* * * * *
8508 TCTTTCCCTTCATGTCTTCGTGGTACTGGATTCGCTGTTACGACTTAGATCTTTCCCTTCATGTC
65 TCTTTCCCTTCATGTCTTCGCGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG-C
8573 TTCGTGATACTGGATCCG
129 TTCGTGATACTGG-TCCG
* * * * * * * *
8591 CCGTTGCGGCTTAAATCTTTCTCTTCATGTCTTTGAGGTACAAGG-TTCGCCATTGTGACTTAAA
1 CCGTTGCGACTTAAACCTTTCCCTTTATGTCTTTGAGGTAC-TGGATTCGCCGTTGCGGCTTAAA
* * * *
8655 CCTTTCCTTTTATGTCTTCGCGGTATTGGA-TCTGCCGTTGCGGCTTAAATCTTTCCCTTCATGC
65 TCTTTCCCTTCATGTCTTCGCGGTACTGGATTC-GCCGTTGCGGCTTAAATCTTTCCCTTCATGC
** * *
8719 TAAG-GATGTACAAGGTTCG
129 TTCGTGA--TAC-TGGTCCG
* * * * *
8738 CCGTTGCAACTTAAACCCTTCCCTTTATTTCGTTGTGGTACTGGATTCGCCGTTGCGGCTTAAAT
1 CCGTTGCGACTTAAACCTTTCCCTTTATGTCTTTGAGGTACTGGATTCGCCGTTGCGGCTTAAAT
* ** * * *
8803 CTTTCCC-TCTTGTATCTTTACGGTACTGGATCCGTCGTTGCGGCTTAGATCTTTCCCTTCATGC
66 CTTTCCCTTCATG--TCTTCGCGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGC
* *
8867 TTC-TGAGGTACAAGGTTCG
129 TTCGTGA--TAC-TGGTCCG
* * * * *
8886 CCGTTGCGACTTAAACCCTTCCCTTTAT-TTTGTTGTGGTACTGGATTCGCTGTTGCTGCTTAAA
1 CCGTTGCGACTTAAACCTTTCCCTTTATGTCT-TTGAGGTACTGGATTCGCCGTTGCGGCTTAAA
* * *** * *
8950 TATTTCCC-TCTTGTATCTTTATGGTACTGGATCCGCCGTTGCGGCTTATATCTTTCCCTTCATG
65 TCTTTCCCTTCATG--TCTTCGCGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
*
9014 CTTCGTGGTACT
128 CTTCGTGATACT
9026 AAGAGCTGTA
Statistics
Matches: 480, Mismatches: 86, Indels: 33
0.80 0.14 0.06
Matches are distributed among these distances:
145 2 0.00
146 15 0.03
147 273 0.57
148 187 0.39
149 3 0.01
ACGTcount: A:0.15, C:0.26, G:0.20, T:0.39
Consensus pattern (145 bp):
CCGTTGCGACTTAAACCTTTCCCTTTATGTCTTTGAGGTACTGGATTCGCCGTTGCGGCTTAAAT
CTTTCCCTTCATGTCTTCGCGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGCTT
CGTGATACTGGTCCG
Found at i:9016 original size:148 final size:148
Alignment explanation
Indices: 8675--9018 Score: 553
Period size: 148 Copynumber: 2.3 Consensus size: 148
8665 TATGTCTTCG
* * ** *
8675 CGGTATTGGATCTGCCGTTGCGGCTTAAATCTTTCCCTTCATGCTAAGGATGTACAAGGTTCGCC
1 CGGTACTGGATCCGCCGTTGCGGCTTAAATCTTTCCCTTCATGCTTCGGAGGTACAAGGTTCGCC
*
8740 GTTGCAACTTAAACCCTTCCCTTTATTTCGTTGTGGTACTGGATTCGCCGTTGCGGCTTAAATCT
66 GTTGCAACTTAAACCCTTCCCTTTATTTCGTTGTGGTACTGGATTCGCCGTTGCGGCTTAAATAT
8805 TTCCCTCTTGTATCTTTA
131 TTCCCTCTTGTATCTTTA
* * *
8823 CGGTACTGGATCCGTCGTTGCGGCTTAGATCTTTCCCTTCATGCTTCTGAGGTACAAGGTTCGCC
1 CGGTACTGGATCCGCCGTTGCGGCTTAAATCTTTCCCTTCATGCTTCGGAGGTACAAGGTTCGCC
* * * *
8888 GTTGCGACTTAAACCCTTCCCTTTATTTTGTTGTGGTACTGGATTCGCTGTTGCTGCTTAAATAT
66 GTTGCAACTTAAACCCTTCCCTTTATTTCGTTGTGGTACTGGATTCGCCGTTGCGGCTTAAATAT
8953 TTCCCTCTTGTATCTTTA
131 TTCCCTCTTGTATCTTTA
* *
8971 TGGTACTGGATCCGCCGTTGCGGCTTATATCTTTCCCTTCATGCTTCG
1 CGGTACTGGATCCGCCGTTGCGGCTTAAATCTTTCCCTTCATGCTTCG
9019 TGGTACTAAG
Statistics
Matches: 179, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
148 179 1.00
ACGTcount: A:0.15, C:0.25, G:0.21, T:0.39
Consensus pattern (148 bp):
CGGTACTGGATCCGCCGTTGCGGCTTAAATCTTTCCCTTCATGCTTCGGAGGTACAAGGTTCGCC
GTTGCAACTTAAACCCTTCCCTTTATTTCGTTGTGGTACTGGATTCGCCGTTGCGGCTTAAATAT
TTCCCTCTTGTATCTTTA
Found at i:19381 original size:58 final size:56
Alignment explanation
Indices: 19202--19556 Score: 342
Period size: 58 Copynumber: 6.1 Consensus size: 56
19192 ACACCCGAGA
* * *
19202 GTAAAATGGTAATTTTT-TAAAAAAAGGGGATAAAAAAT-GAATTTTTTAGAAGTTTGGGG
1 GTAAAATGGTAATTTTTGGAAAAATA-GGG-T-AAAAATGGAATTTTTGA-AAGTTT-GGG
* * * *
19261 GTAAAATGGTAA-TTTTGGGAAAATAAGGTAAAAATGGAATTTTGGGAAGTTTGGGG
1 GTAAAATGGTAATTTTTGGAAAAATAGGGTAAAAATGGAATTTTTGAAAGTTT-GGG
* *
19317 GTAAAATGGTAATTTTTGGAAAAATCGGGGTCAAAATGGAATTTTTGAAAGTTTGAGG
1 GTAAAATGGTAATTTTTGGAAAAAT-AGGGTAAAAATGGAATTTTTGAAAGTTTG-GG
* * *
19375 GTAAAATGGTAATTTTTGGAAAAATCAAGGTTAAAAATGGAATTTTTGGAAGTTCGGG
1 GTAAAATGGTAATTTTTGGAAAAAT--AGGGTAAAAATGGAATTTTTGAAAGTTTGGG
*
19433 GTAAAATGGTAATTTTTTGAAAAATAGGGTCAAAAATGGAATATTTTGGAAA-TTTGGCG
1 GTAAAATGGTAATTTTTGGAAAAATAGGGT-AAAAATGGAAT-TTTT-GAAAGTTTGG-G
** * ** *
19492 GTAAAAAT-GTAATTTTTGGAAAGTTTAGGGTCAAAATATAATTTTAGAGAAGTTTAGGG
1 GT-AAAATGGTAATTTTTGGAAA-AATAGGGTAAAAATGGAATTTTTGA-AAGTTT-GGG
19551 GTAAAA
1 GTAAAA
19557 ATATAACTTT
Statistics
Matches: 251, Mismatches: 30, Indels: 31
0.80 0.10 0.10
Matches are distributed among these distances:
56 32 0.13
57 33 0.13
58 99 0.39
59 74 0.29
60 13 0.05
ACGTcount: A:0.39, C:0.02, G:0.26, T:0.33
Consensus pattern (56 bp):
GTAAAATGGTAATTTTTGGAAAAATAGGGTAAAAATGGAATTTTTGAAAGTTTGGG
Found at i:19419 original size:30 final size:29
Alignment explanation
Indices: 19258--19513 Score: 174
Period size: 29 Copynumber: 8.9 Consensus size: 29
19248 TAGAAGTTTG
*
19258 GGGGTAAAATGGTAA-TTTTGGGAAAAT-
1 GGGGTAAAATGGTAATTTTTGGAAAAATC
** * *** *
19285 AAGGTAAAAATGG-AATTTTGGGAAGTTTG
1 GGGGT-AAAATGGTAATTTTTGGAAAAATC
19314 GGGGTAAAATGGTAATTTTTGGAAAAATC
1 GGGGTAAAATGGTAATTTTTGGAAAAATC
** *
19343 GGGGTCAAAATGG-AATTTTT-GAAAGTTT
1 GGGGT-AAAATGGTAATTTTTGGAAAAATC
19371 GAGGGTAAAATGGTAATTTTTGGAAAAATC
1 G-GGGTAAAATGGTAATTTTTGGAAAAATC
* * **
19401 AAGGTTAAAAATGG-AATTTTTGG-AAGTTC
1 -GGGGT-AAAATGGTAATTTTTGGAAAAATC
*
19430 GGGGTAAAATGGTAATTTTTTGAAAAAT-
1 GGGGTAAAATGGTAATTTTTGGAAAAATC
* * *
19458 AGGGTCAAAAATGG-AATATTTTGG-AAATTT
1 GGGGT--AAAATGGTAAT-TTTTGGAAAAATC
19488 GGCGGTAAAAAT-GTAATTTTTGGAAA
1 GG-GGT-AAAATGGTAATTTTTGGAAA
19514 GTTTAGGGTC
Statistics
Matches: 177, Mismatches: 33, Indels: 35
0.72 0.13 0.14
Matches are distributed among these distances:
27 12 0.07
28 49 0.28
29 58 0.33
30 48 0.27
31 10 0.06
ACGTcount: A:0.38, C:0.02, G:0.27, T:0.32
Consensus pattern (29 bp):
GGGGTAAAATGGTAATTTTTGGAAAAATC
Found at i:19513 original size:29 final size:28
Alignment explanation
Indices: 19234--19661 Score: 203
Period size: 30 Copynumber: 14.7 Consensus size: 28
19224 AAAGGGGATA
* *
19234 AAAAATG-AATTTTTTAGAAGTTTGGGGGT
1 AAAAATGTAA-TTTTTGGAAATTT-GGGGT
* * **
19263 -AAAATGGTAATTTTGGGAAA-ATAAGGT
1 AAAAAT-GTAATTTTTGGAAATTTGGGGT
* * *
19290 AAAAATGGAATTTTGGGAAGTTTGGGGGT
1 AAAAATGTAATTTTTGGAAATTT-GGGGT
* *
19319 -AAAATGGTAATTTTTGGAAAAATCGGGGT
1 AAAAAT-GTAATTTTTGG-AAATTTGGGGT
* *
19348 CAAAATGGAATTTTT-GAAAGTTTGAGGGT
1 AAAAATGTAATTTTTGGAAA-TTTG-GGGT
*** *
19377 -AAAATGGTAATTTTTGGAAAAATCAAGGTT
1 AAAAAT-GTAATTTTTGG--AAATTTGGGGT
* * *
19407 AAAAATGGAATTTTTGGAAGTTCGGGGT
1 AAAAATGTAATTTTTGGAAATTTGGGGT
* ** *
19435 -AAAATGGTAATTTTTTGAAAAATAGGGT
1 AAAAAT-GTAATTTTTGGAAATTTGGGGT
*
19463 CAAAAATGGAATATTTTGGAAATTTGGCGGT
1 -AAAAATGTAAT-TTTTGGAAATTTGG-GGT
*
19494 AAAAATGTAATTTTTGGAAAGTTTAGGGT
1 AAAAATGTAATTTTTGGAAA-TTTGGGGT
* * * *
19523 CAAAATATAATTTTAGAGAAGTTTAGGGGT
1 AAAAATGTAATTTTTG-GAAATTT-GGGGT
* * *
19553 AAAAATATAA-CTTTGGAGAAGTTTAGAGGT
1 AAAAATGTAATTTTTGGA-AA-TTT-GGGGT
* *
19583 CAAAATATAA-TTTTGGAATAGTTTAGGGGT
1 AAAAATGTAATTTTTGGAA-A-TTT-GGGGT
*
19613 TAAAATGTAA-TTTTGGAATAGTTTAGGGGT
1 AAAAATGTAATTTTTGGAA-A-TTT-GGGGT
*
19643 CAAAATGTAA-TTTTGGAAA
1 AAAAATGTAATTTTTGGAAA
19662 AGTTTAGGGT
Statistics
Matches: 313, Mismatches: 60, Indels: 52
0.74 0.14 0.12
Matches are distributed among these distances:
27 23 0.07
28 48 0.15
29 83 0.27
30 147 0.47
31 9 0.03
32 3 0.01
ACGTcount: A:0.38, C:0.02, G:0.26, T:0.34
Consensus pattern (28 bp):
AAAAATGTAATTTTTGGAAATTTGGGGT
Found at i:19560 original size:30 final size:30
Alignment explanation
Indices: 19475--19685 Score: 229
Period size: 30 Copynumber: 7.1 Consensus size: 30
19465 AAAATGGAAT
* *
19475 ATTTTGGA-AA-TTT-GGCGGTAAAAATGTA
1 ATTTTGGAGAAGTTTAGG-GGTCAAAATATA
19503 ATTTTTGGA-AAGTTTA-GGGTCAAAATATA
1 A-TTTTGGAGAAGTTTAGGGGTCAAAATATA
* *
19532 ATTTTAGAGAAGTTTAGGGGTAAAAATATA
1 ATTTTGGAGAAGTTTAGGGGTCAAAATATA
* *
19562 ACTTTGGAGAAGTTTAGAGGTCAAAATATA
1 ATTTTGGAGAAGTTTAGGGGTCAAAATATA
* *
19592 ATTTTGGA-ATAGTTTAGGGGTTAAAATGTA
1 ATTTTGGAGA-AGTTTAGGGGTCAAAATATA
*
19622 ATTTTGGA-ATAGTTTAGGGGTCAAAATGTA
1 ATTTTGGAGA-AGTTTAGGGGTCAAAATATA
* * *
19652 ATTTTGGAAAAGTTTAGGGTTCAAAATATG
1 ATTTTGGAGAAGTTTAGGGGTCAAAATATA
19682 ATTT
1 ATTT
19686 ATTAATAGTT
Statistics
Matches: 160, Mismatches: 16, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
28 7 0.04
29 28 0.17
30 124 0.77
31 1 0.01
ACGTcount: A:0.37, C:0.03, G:0.24, T:0.36
Consensus pattern (30 bp):
ATTTTGGAGAAGTTTAGGGGTCAAAATATA
Found at i:21515 original size:17 final size:18
Alignment explanation
Indices: 21492--21550 Score: 68
Period size: 17 Copynumber: 3.4 Consensus size: 18
21482 ACATTTATTT
*
21492 ATTTAAATTT-ATAATAA
1 ATTTAAATTTAAAAATAA
*
21509 TTTTAAATTTAAAAATAA
1 ATTTAAATTTAAAAATAA
* *
21527 ATTTAAACTT-AAATTAA
1 ATTTAAATTTAAAAATAA
21544 ATTTAAA
1 ATTTAAA
21551 AAAGGCCTAG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
17 22 0.61
18 14 0.39
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTTAAATTTAAAAATAA
Found at i:21519 original size:6 final size:6
Alignment explanation
Indices: 21492--21550 Score: 52
Period size: 6 Copynumber: 10.2 Consensus size: 6
21482 ACATTTATTT
* ** *
21492 ATTTAA ATTTATA A--TAA TTTTAA ATTTAA AAATAA ATTTAA ACTTAA
1 ATTTAA ATTTA-A ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
21539 A-TTAA ATTTAA A
1 ATTTAA ATTTAA A
21551 AAAGGCCTAG
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
4 1 0.02
5 7 0.17
6 32 0.76
7 2 0.05
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (6 bp):
ATTTAA
Found at i:23769 original size:2 final size:2
Alignment explanation
Indices: 23762--23789 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
23752 TCTTTAAGCA
23762 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23790 TCTCATTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23922 original size:16 final size:16
Alignment explanation
Indices: 23901--23945 Score: 51
Period size: 14 Copynumber: 3.0 Consensus size: 16
23891 GTAGAAGTAT
23901 AATAAAATATTATAAA
1 AATAAAATATTATAAA
23917 AAT-AAATATT-TAAA
1 AATAAAATATTATAAA
* *
23931 AA-AACATATAATAAA
1 AATAAAATATTATAAA
23946 TTTTTAAGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 11 0.44
15 11 0.44
16 3 0.12
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (16 bp):
AATAAAATATTATAAA
Found at i:23932 original size:14 final size:15
Alignment explanation
Indices: 23905--23945 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
23895 AAGTATAATA
23905 AAATATTATAAAAAT
1 AAATATTATAAAAAT
23920 AAATATT-TAAAAA-
1 AAATATTATAAAAAT
*
23933 AACATATAATAAA
1 AA-ATATTATAAA
23946 TTTTTAAGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 2 0.09
14 10 0.43
15 11 0.48
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (15 bp):
AAATATTATAAAAAT
Found at i:25543 original size:29 final size:29
Alignment explanation
Indices: 25501--25569 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
25491 CAATAATATA
*
25501 AAAAGTTTTAGGGGGAAGT-AGAAGGGAGT
1 AAAAGTTTTGGGGGGAAGTGAG-AGGGAGT
25530 AAAAGTTTTGGGGGGAAGTGAGAGGGAGT
1 AAAAGTTTTGGGGGGAAGTGAGAGGGAGT
25559 AAAAGTTTTGG
1 AAAAGTTTTGG
25570 ACAAAAATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
29 36 0.95
30 2 0.05
ACGTcount: A:0.35, C:0.00, G:0.42, T:0.23
Consensus pattern (29 bp):
AAAAGTTTTGGGGGGAAGTGAGAGGGAGT
Found at i:25829 original size:24 final size:24
Alignment explanation
Indices: 25811--25855 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
25801 TTCGAATTAT
25811 TCAAGT-TATTCGAATTCGAAAAC
1 TCAAGTCTATTCGAATTCGAAAAC
*
25834 TCAATTCTATTCGAATTCGAAA
1 TCAAGTCTATTCGAATTCGAAA
25856 TTCGAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (24 bp):
TCAAGTCTATTCGAATTCGAAAAC
Found at i:27019 original size:31 final size:31
Alignment explanation
Indices: 26975--27039 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
26965 TTCTCATGAA
26975 AATGTTAACACTGTACAATAAATATTTTTAT
1 AATGTTAACACTGTACAATAAATATTTTTAT
*
27006 AATGTTTAA-ACTGTGCAATAAATATTTTTAT
1 AATG-TTAACACTGTACAATAAATATTTTTAT
27037 AAT
1 AAT
27040 TGCAAAATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 28 0.88
32 4 0.12
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.43
Consensus pattern (31 bp):
AATGTTAACACTGTACAATAAATATTTTTAT
Found at i:33572 original size:22 final size:20
Alignment explanation
Indices: 33521--33573 Score: 52
Period size: 22 Copynumber: 2.5 Consensus size: 20
33511 TTTTTGAAAG
*
33521 AAAAATTGTTTTTTCCAAAT
1 AAAAATTTTTTTTTCCAAAT
*
33541 AAAAGCATTTTTTTTTTCAAAGCT
1 AAAA--ATTTTTTTTTCCAAA--T
33565 AAAAATTTT
1 AAAAATTTT
33574 AATTTCTCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
20 4 0.15
22 18 0.67
24 5 0.19
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.45
Consensus pattern (20 bp):
AAAAATTTTTTTTTCCAAAT
Found at i:40665 original size:27 final size:28
Alignment explanation
Indices: 40608--40674 Score: 75
Period size: 27 Copynumber: 2.4 Consensus size: 28
40598 AATTAATTAA
**
40608 AATAATAATAAAATAATTTATGATAATAT
1 AATAATAAT-AAATAATCAATGATAATAT
*
40637 AATAATAATAAATAA-CAATGATGATAT
1 AATAATAATAAATAATCAATGATAATAT
40664 AA-ATATAATAA
1 AATA-ATAATAA
40675 TATCTCTACA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 1 0.03
27 18 0.53
28 6 0.18
29 9 0.26
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.33
Consensus pattern (28 bp):
AATAATAATAAATAATCAATGATAATAT
Found at i:48518 original size:6 final size:6
Alignment explanation
Indices: 48507--48538 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
48497 ATGGATGTCC
*
48507 ATCAAG ATCAAG ATAAAG ATCAAG ATCAAG AT
1 ATCAAG ATCAAG ATCAAG ATCAAG ATCAAG AT
48539 AAGGTTTGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.19
Consensus pattern (6 bp):
ATCAAG
Found at i:51035 original size:96 final size:95
Alignment explanation
Indices: 50847--51038 Score: 228
Period size: 96 Copynumber: 2.0 Consensus size: 95
50837 TCTTTGCGAA
* * *
50847 AAGGATATTTGATTATCTCGATTTGAAGAAAAGTTGCACCTAGTAAGTTAAGGCGCAATATTTCG
1 AAGGATATTCGATTATCTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAATATTTCG
* * *
50912 GAATCGAAGATAAGGAAACGTTGCCTCGATT
66 AAATCGAAGATAAAGAAAC-TTACCTCGATT
* * * *
50943 AAGGGTATTCGATTATTTTGATTTGAGGAAAAATTGCACCTAGTAAGTTAAGGCACAA-ATTTTC
1 AAGGATATTCGATTATCTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAATA-TTTC
51007 GAAACTCGAA-ATAAAAGAATA-TTACCTCGATT
65 GAAA-TCGAAGAT-AAAGAA-ACTTACCTCGATT
51039 TTAAAGTTTT
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
95 1 0.01
96 70 0.85
97 10 0.12
98 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.30
Consensus pattern (95 bp):
AAGGATATTCGATTATCTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAATATTTCG
AAATCGAAGATAAAGAAACTTACCTCGATT
Done.