Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005607.1 Kokia drynarioides strain JFW-HI SEQ_119751, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 829

Length: 1383
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41


Found at i:45 original size:30 final size:29

Alignment explanation


    Indices: 4--137  Score: 137
    Period size: 30  Copynumber: 4.5  Consensus size: 29

          1 TCA

                  *                      
          4 AAATTTCCAAAAATTTGAATTTAACCCTC
          1 AAATTTTCAAAAATTTGAATTTAACCCTC

                             *   *        
         33 AAATTTTTCAAAAATTTAAATATAACCCTC
          1 AAA-TTTTCAAAAATTTGAATTTAACCCTC

                   *                      
         63 AAACTTTCCAAAAATTTGAA-TTAACCCTC
          1 AAA-TTTTCAAAAATTTGAATTTAACCCTC

               *    *        *     *      
         92 AAACTTTCTAAAATTTCCAATTTGACCC-C
          1 AAATTTTCAAAAATTT-GAATTTAACCCTC

                             
        121 TAAATTTTCTAAAAATT
          1 -AAATTTTC-AAAAATT

        138 CAAATTTGAC


Statistics
Matches: 86,  Mismatches: 14, Indels: 8
        0.80            0.13        0.07

Matches are distributed among these distances:
  28   10  0.12
  29   17  0.20
  30   53  0.62
  31    6  0.07

ACGTcount: A:0.42, C:0.20, G:0.02, T:0.36


Consensus pattern (29 bp):   
AAATTTTCAAAAATTTGAATTTAACCCTC

Done.