Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01005615.1 Kokia drynarioides strain JFW-HI SEQ_119766, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 894
Length: 1491
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Found at i:974 original size:430 final size:431
Alignment explanation
Indices: 5--1483 Score: 1878
Period size: 430 Copynumber: 3.4 Consensus size: 431
1 TTTC
* * *
5 CTAGTTCTTTTATAACTTCGGTT-CTAGATAGTAGTCGAGATGATCCATTCCTTTGACCAATTTT
1 CTAGTTCTTTTATAACTTCGGTTCCT-GAGAGTAGTCAAGACGATCCATTCCTTTGACCAATTTT
* * * * * * * *
69 TTGAACATTCCATGCTTGGGAAATCGCATCATTTAG-CTAAAACGTTTGTCATTTTGT-AAAAAG
65 TCGAACATTTCATGCTCGGGAAATCGCATCACTTAGTCTAAAAAGTTTGGCATGTTGTAAAAAAC
* * * * * * ** *
132 TTTTGGTCTTTGAATTAAAATCTTTTTTACATGAGAGTTGTTTCTCTCCTGGTTCTTGGATGAAG
130 TTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGGTTCTCTCTTGGTTCTCGGACAAAC
** * * * * * * *
197 TTCTGAACTTGTCAAACATTTACT-AAATCTTTTATAACTTTGATTCCTGATAGTAGTCAAGATG
195 TTCTGAACTTGTCAAACATTTA-TGAGTTCTTTTATAACTTTGGTTTCTAAGAGTATTCAATACG
* * * * * *
261 ATCCATTTCTTCGACCAATTTTTTGAACATTCCATGATCGGGAAATCGTATCATTTGGTC-AAAA
259 ATCCATTCCTTCGACCAATTTCTTGAACATTCCATGCTTGGGAAATCGCATCATTTGATCTAAAA
* * * * * *
325 TAGTTTGTCAATTTTTGTAAATAGCTTTTGGTCTTTAAATTAAAAGCTTTTTTACGTTAGAACTC
324 -AGTTTGTC-A-TTTTGTAAAAAGCTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTG
* * * *
390 TTTCTCTCCAGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTA
386 TTTCTCT-CTGGTTCTTGGATGAAGTTCCGAACTTGTCAAACATTTA
* * * * * * ** *
437 CGAGTTCTTTTATAACTTCAGTTCCTGAGAGTATTTAATACGATCCATTCCTTAGACTTATTTTC
1 CTAGTTCTTTTATAACTTCGGTTCCTGAGAGTAGTCAAGACGATCCATTCCTTTGACCAATTTTT
* * * *
502 CGAACATTTCATTCTCGGGAAATCGCATCACATGGTCTAAAAAGTTTGGCATGTTGTAAAAAAAT
66 CGAACATTTCATGCTCGGGAAATCGCATCACTTAGTCTAAAAAGTTTGGCATGTTGTAAAAAACT
*
567 TTTGGTGTTT-AATTTAAAAACTTTTTTACGTGAGAATTGGTTCTCTCTTGGTTCTCGGACAAAC
131 TTTGGTCTTTGAA-TTAAAAACTTTTTTACGTGAGAATTGGTTCTCTCTTGGTTCTCGGACAAAC
*
631 TTCTGAACATGTCAAACATTTATGAGTTCTTTTATAACTTTGGTTTCTAAGAGTATTCAATACGA
195 TTCTGAACTTGTCAAACATTTATGAGTTCTTTTATAACTTTGGTTTCTAAGAGTATTCAATACGA
* * *
696 TCCAATCCTTCGACCAATTTCTTGAACATTCCATGCTTGGGAAATCGCATCATTTGCTCTAAAAC
260 TCCATTCCTTCGACCAATTTCTTGAACATTCCATGCTTGGGAAATCGCATCATTTGATCTAAAAA
761 GTTTGTCATTTTGTAAAAAGCTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTC
325 GTTTGTCATTTTGTAAAAAGCTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTC
826 TCT-TGGTTCTTGGATGAAGTTCCGAACTTGTCAAACATTTA
390 TCTCTGGTTCTTGGATGAAGTTCCGAACTTGTCAAACATTTA
* * * * * **
867 CTAGTTCTTTTATAAATTCGGTTCCTGAGAGTATTTAATACGATCCATTCCTTCGACTTATTTTT
1 CTAGTTCTTTTATAACTTCGGTTCCTGAGAGTAGTCAAGACGATCCATTCCTTTGACCAATTTTT
* * * *
932 CGAACATTTCATTCTCGGGAAATCGTATCACTTGGTCTAAAAAGTTTGGCATGCTGTAAAAAACT
66 CGAACATTTCATGCTCGGGAAATCGCATCACTTAGTCTAAAAAGTTTGGCATGTTGTAAAAAACT
* * *
997 TTTGGTCTTTGATTTAAAAACTTTTTTACGTGACAATTGGTTATCTCTTGGTTCTCGGACAAACT
131 TTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGGTTCTCTCTTGGTTCTCGGACAAACT
*
1062 TCCGAACTTGTCAAACATTTATGAGTTCTTTTATAACTTTGGTTTCTAAGAGTATTCAATACGAT
196 TCTGAACTTGTCAAACATTTATGAGTTCTTTTATAACTTTGGTTTCTAAGAGTATTCAATACGAT
*
1127 CCATTCCATCGACCAATTTCTTGAACATTCCATGCTTGGGAAATCGCATCATTTGATCTAAAAAG
261 CCATTCCTTCGACCAATTTCTTGAACATTCCATGCTTGGGAAATCGCATCATTTGATCTAAAAAG
* * * * * *
1192 ATTGTCATTTTATAAACAA-CATTTAGTCTTTGGATTAAAAACTTTATTACGTGAGAATTGTTTC
326 TTTGTCATTTTGTAAA-AAGCTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTC
* * *
1256 TCTCTCGATTCTTGGATGAAGTGCCGAACTTGTCAAACATTTC
390 TCTCT-GGTTCTTGGATGAAGTTCCGAACTTGTCAAACATTTA
* * * * *
1299 CTAATTCTTTTATAACTTCGGTTCCAGATAGTAGTCGAGATGATCCATTCCTTTGACCAATTTTT
1 CTAGTTCTTTTATAACTTCGGTTCCTGAGAGTAGTCAAGACGATCCATTCCTTTGACCAATTTTT
* * * ** * * *
1364 TGATC-TTTCCATGCTCGGGAAATCGCATCATTTAGTCTAAAACTTTTGTCATTTTGTAAAAAGC
66 CGAACATTT-CATGCTCGGGAAATCGCATCACTTAGTCTAAAAAGTTTGGCATGTTGTAAAAAAC
* *
1428 TTTTGGTCTTTGAATTAAAATCTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCT
130 TTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGGTTCTCTCTTGGTTCT
1484 TGGATGAA
Statistics
Matches: 918, Mismatches: 118, Indels: 22
0.87 0.11 0.02
Matches are distributed among these distances:
430 396 0.43
431 7 0.01
432 318 0.35
433 24 0.03
434 169 0.18
435 4 0.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Consensus pattern (431 bp):
CTAGTTCTTTTATAACTTCGGTTCCTGAGAGTAGTCAAGACGATCCATTCCTTTGACCAATTTTT
CGAACATTTCATGCTCGGGAAATCGCATCACTTAGTCTAAAAAGTTTGGCATGTTGTAAAAAACT
TTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGGTTCTCTCTTGGTTCTCGGACAAACT
TCTGAACTTGTCAAACATTTATGAGTTCTTTTATAACTTTGGTTTCTAAGAGTATTCAATACGAT
CCATTCCTTCGACCAATTTCTTGAACATTCCATGCTTGGGAAATCGCATCATTTGATCTAAAAAG
TTTGTCATTTTGTAAAAAGCTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCT
CTCTGGTTCTTGGATGAAGTTCCGAACTTGTCAAACATTTA
Found at i:1294 original size:646 final size:648
Alignment explanation
Indices: 1--1491 Score: 1960
Period size: 646 Copynumber: 2.3 Consensus size: 648
*
1 TTTCCTAGTTCTTTTATAACTTCGGTTCTAGATAGTAGTCGAGATGATCCATTCCTTTGACCAAT
1 TTTCATAGTTCTTTTATAACTTCGGTTCTAGATAGTAGTCGAGATGATCCATTCCTTTGACCAAT
66 TTTTTGAACATTCCATGCTTGGGAAATCGCATCATTTAG-CTAAAACGTTTGTCATTTTGTAAAA
66 TTTTTGAACATTCCATGCTTGGGAAATCGCATCATTTAGTCTAAAACGTTTGTCATTTTGTAAAA
* *
130 AG-TTTTGGTCTTTGAATTAAAATCTTTTTTACATGAGAGTTGTTTCTCTCCTGGTTCTTGGATG
131 AGCTTTTGGTCTTTGAATTAAAATCTTTTTTACGTGAGAATTGTTTCTCT--TGGTTCTTGGATG
* * * *
194 AAGTTCTGAACTTGTCAAACATTTACTAAATCTTTTATAACTTTGATTCCTGATAGTAGTCAAGA
194 AAGTTCCGAACTTGTCAAACATTTACTAAATCTTTTATAAATTCGATTCCTGAGAGTAGTCAAGA
* * * *
259 TGATCCATTTCTTCGACCAATTTTTTGAACATTCCATGATCGGGAAATCGTATCATTTGGTCAAA
259 CGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCGTATCACTTGGTCAAA
* ** * * * * *
324 ATAGTTTGTCAATTTTTGTAAATAGCTTTTGGTCTTTAAATTAAAAGCTTTTTTACGTTAGAACT
324 ATAGTTTGGCAATTGCTGTAAAAAACTTTTGGTCTTTAAATTAAAAACTTTTTTACGTGACAACT
* * * *
389 CTTTCTCTCCAGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTACGAGTTCTTTTATAACT
389 CGTTATCTCCAGGTTCTCGGACAAACTTCCGAACTTGTCAAAAATTTACGAGTTCTTTTATAACT
* * * ** * *
454 TCAGTTCCTGAGAGTATTTAATACGATCCATTCCTTAGACTTATTTTCCGAACATTTCATTCTCG
454 TCAGTTCCTAAGAGTATTCAATACGATCCATTCCATAGACCAATTTTCCGAACATTCCATGCTCG
* * * * *
519 GGAAATCGCATCACATGGTCTAAAAAGTTTGGCATGTTGTAAAAAAATTTTGGTGTTTAATTTAA
519 GGAAATCGCATCACATGATCTAAAAAGATTGGCATGTTATAAAAAAATTTTAGTCTTTAATTTAA
* * * * *
584 AAACTTTTTTACGTGAGAATTGGTTCTCTCTTGGTTCTCGGACAAACTTCTGAACATGTCAAACA
584 AAACTTTATTACGTGAGAATTGGTTCTCTCTCGATTCTCGGACAAACTGCCGAACATGTCAAACA
* * * * * * * *
649 TTT-ATGAGTTCTTTTATAACTTTGGTTTCTA-AGAGTATTCAATACGATCCAATCCTTCGACCA
1 TTTCAT-AGTTCTTTTATAACTTCGG-TTCTAGATAGTAGTCGAGATGATCCATTCCTTTGACCA
*
712 ATTTCTTGAACATTCCATGCTTGGGAAATCGCATCATTT-GCTCTAAAACGTTTGTCATTTTGTA
64 ATTTTTTGAACATTCCATGCTTGGGAAATCGCATCATTTAG-TCTAAAACGTTTGTCATTTTGTA
*
776 AAAAGCTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTTGGTTCTTGGAT
128 AAAAGCTTTTGGTCTTTGAATTAAAATCTTTTTTACGTGAGAATTGTTTCTCTTGGTTCTTGGAT
** * * * *
841 GAAGTTCCGAACTTGTCAAACATTTACTAGTTCTTTTATAAATTCGGTTCCTGAGAGTATTTAAT
193 GAAGTTCCGAACTTGTCAAACATTTACTAAATCTTTTATAAATTCGATTCCTGAGAGTAGTCAAG
** * **
906 ACGATCCATTCCTTCGACTTATTTTTCGAACATTTCATTCTCGGGAAATCGTATCACTTGGTCTA
258 ACGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCGTATCACTTGGTC-A
* *
971 AAA-AGTTTGGC-A-TGCTGTAAAAAACTTTTGGTCTTTGATTTAAAAACTTTTTTACGTGACAA
322 AAATAGTTTGGCAATTGCTGTAAAAAACTTTTGGTCTTTAAATTAAAAACTTTTTTACGTGACAA
* * ** * *
1033 TTGGTTATCTCTTGGTTCTCGGACAAACTTCCGAACTTGTCAAACATTTATGAGTTCTTTTATAA
387 CTCGTTATCTCCAGGTTCTCGGACAAACTTCCGAACTTGTCAAAAATTTACGAGTTCTTTTATAA
** * * *
1098 CTTTGGTTTCTAAGAGTATTCAATACGATCCATTCCATCGACCAA-TTTCTTGAACATTCCATGC
452 CTTCAGTTCCTAAGAGTATTCAATACGATCCATTCCATAGACCAATTTTC-CGAACATTCCATGC
* ** * * * *
1162 TTGGGAAATCGCATCATTTGATCTAAAAAGATTGTCATTTTATAAACAACA-TTTAGTCTTTGGA
516 TCGGGAAATCGCATCACATGATCTAAAAAGATTGGCATGTTATAAA-AAAATTTTAGTCTTT-AA
* * ** * *
1226 -TTAAAAACTTTATTACGTGAGAATTGTTTCTCTCTCGATTCTTGGATGAAGTGCCGAACTTGTC
579 TTTAAAAACTTTATTACGTGAGAATTGGTTCTCTCTCGATTCTCGGACAAACTGCCGAACATGTC
1290 AAACA
644 AAACA
* * *
1295 TTTCCTAATTCTTTTATAACTTCGGTTCCAGATAGTAGTCGAGATGATCCATTCCTTTGACCAAT
1 TTTCATAGTTCTTTTATAACTTCGGTTCTAGATAGTAGTCGAGATGATCCATTCCTTTGACCAAT
* * * *
1360 TTTTTGATCTTTCCATGCTCGGGAAATCGCATCATTTAGTCTAAAACTTTTGTCATTTTGTAAAA
66 TTTTTGAACATTCCATGCTTGGGAAATCGCATCATTTAGTCTAAAACGTTTGTCATTTTGTAAAA
1425 AGCTTTTGGTCTTTGAATTAAAATCTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATG
131 AGCTTTTGGTCTTTGAATTAAAATCTTTTTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGATG
1490 AA
194 AA
Statistics
Matches: 725, Mismatches: 104, Indels: 28
0.85 0.12 0.03
Matches are distributed among these distances:
645 8 0.01
646 394 0.54
647 11 0.02
648 232 0.32
649 36 0.05
650 44 0.06
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Consensus pattern (648 bp):
TTTCATAGTTCTTTTATAACTTCGGTTCTAGATAGTAGTCGAGATGATCCATTCCTTTGACCAAT
TTTTTGAACATTCCATGCTTGGGAAATCGCATCATTTAGTCTAAAACGTTTGTCATTTTGTAAAA
AGCTTTTGGTCTTTGAATTAAAATCTTTTTTACGTGAGAATTGTTTCTCTTGGTTCTTGGATGAA
GTTCCGAACTTGTCAAACATTTACTAAATCTTTTATAAATTCGATTCCTGAGAGTAGTCAAGACG
ATCCATTCCTTCGACCAATTTTTCGAACATTCCATGATCGGGAAATCGTATCACTTGGTCAAAAT
AGTTTGGCAATTGCTGTAAAAAACTTTTGGTCTTTAAATTAAAAACTTTTTTACGTGACAACTCG
TTATCTCCAGGTTCTCGGACAAACTTCCGAACTTGTCAAAAATTTACGAGTTCTTTTATAACTTC
AGTTCCTAAGAGTATTCAATACGATCCATTCCATAGACCAATTTTCCGAACATTCCATGCTCGGG
AAATCGCATCACATGATCTAAAAAGATTGGCATGTTATAAAAAAATTTTAGTCTTTAATTTAAAA
ACTTTATTACGTGAGAATTGGTTCTCTCTCGATTCTCGGACAAACTGCCGAACATGTCAAACA
Found at i:1488 original size:216 final size:216
Alignment explanation
Indices: 5--1491 Score: 1727
Period size: 216 Copynumber: 6.9 Consensus size: 216
1 TTTC
* * * * * * *
5 CTAGTTCTTTTATAACTTCGGTTCTAGATAGTAGTCGAGATGATCCATTCCTTTGACCAATTTTT
1 CTAGTTCTTTTATAACTTCGGTTCCAGAGAGTATTCAATACGATCCATTCCTTCGACCAATTTTT
* * *
70 TGAACATTCCATGCTTGGGAAATCGCATCATTTAG-CTAAAACGTTTGTCATTTTGTAAAAAG-T
66 TGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAAAAGCT
* * * * *
133 TTTGGTCTTTGAATTAAAATCTTTTTTACATGAGAGTTGTTTCTCTCCTGGTTCTTGGATGAAGT
131 TTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACT
*
198 TCTGAACTTGTCAAACATTTA
196 TCCGAACTTGTCAAACATTTA
** * * * * * * * *
219 CTAAATCTTTTATAACTTTGATTCCTGATAGTAGTCAAGATGATCCATTTCTTCGACCAATTTTT
1 CTAGTTCTTTTATAACTTCGGTTCCAGAGAGTATTCAATACGATCCATTCCTTCGACCAATTTTT
* * *
284 TGAACATTCCATGATCGGGAAATCGTATCATTTGGTC-AAAATAGTTTGTCAATTTTTGTAAATA
66 TGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAA-AGTTTGTC-A-TTTTGTAAAAA
* * * * * ** *
348 GCTTTTGGTCTTTAAATTAAAAGCTTTTTTACGTTAGAACTCTTTCTCTCCAGGTTCTTGGACGA
128 GCTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGA
*
413 ACTTCCGAACTTGTCAAAAATTTA
193 ACTTCCGAACTTGTCAAACATTTA
* * * * * ** *
437 CGAGTTCTTTTATAACTTCAGTTCCTGAGAGTATTTAATACGATCCATTCCTTAGACTTATTTTC
1 CTAGTTCTTTTATAACTTCGGTTCCAGAGAGTATTCAATACGATCCATTCCTTCGACCAATTTTT
* * * ** * * **
502 CGAACATTTCATTCTCGGGAAATCGCATCACATGGTCTAAAAAGTTTGGCATGTTGTAAAAAAAT
66 TGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAAAAGCT
* * * **
567 TTTGGTGTTT-AATTTAAAAACTTTTTTACGTGAGAATTGGTTCTCTCTTGGTTCTCGGACAAAC
131 TTTGGTCTTTGAA-TTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
* *
631 TTCTGAACATGTCAAACATTTA
195 TTCCGAACTTGTCAAACATTTA
* * *
653 -TGAGTTCTTTTATAACTTTGGTTTCTA-AGAGTATTCAATACGATCCAATCCTTCGACCAATTT
1 CT-AGTTCTTTTATAACTTCGG-TTCCAGAGAGTATTCAATACGATCCATTCCTTCGACCAATTT
* * * *
716 CTTGAACATTCCATGCTTGGGAAATCGCATCATTTGCTCTAAAACGTTTGTCATTTTGTAAAAAG
64 TTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAAAAG
781 CTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGATGAA
129 CTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAA
*
844 GTTCCGAACTTGTCAAACATTTA
194 CTTCCGAACTTGTCAAACATTTA
* * * **
867 CTAGTTCTTTTATAAATTCGGTTCCTGAGAGTATTTAATACGATCCATTCCTTCGACTTATTTTT
1 CTAGTTCTTTTATAACTTCGGTTCCAGAGAGTATTCAATACGATCCATTCCTTCGACCAATTTTT
* * * * * * ** *
932 CGAACATTTCATTCTCGGGAAATCGTATCACTTGGTCTAAAAAGTTTGGCATGCTGTAAAAAACT
66 TGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAAAAGCT
* * * * * **
997 TTTGGTCTTTGATTTAAAAACTTTTTTACGTGACAATTGGTTATCTCTTGGTTCTCGGACAAACT
131 TTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACT
1062 TCCGAACTTGTCAAACATTTA
196 TCCGAACTTGTCAAACATTTA
* * *
1083 -TGAGTTCTTTTATAACTTTGGTTTCTA-AGAGTATTCAATACGATCCATTCCATCGACCAATTT
1 CT-AGTTCTTTTATAACTTCGG-TTCCAGAGAGTATTCAATACGATCCATTCCTTCGACCAATTT
* * * * *
1146 CTTGAACATTCCATGCTTGGGAAATCGCATCATTTGATCTAAAAAGATTGTCATTTTATAAACAA
64 TTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAA-AA
* * * * * *
1211 -CATTTAGTCTTTGGATTAAAAACTTTATTACGTGAGAATTGTTTCTCTCTCGATTCTTGGATGA
128 GCTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGA
* * *
1275 AGTGCCGAACTTGTCAAACATTTC
193 ACTTCCGAACTTGTCAAACATTTA
* * * * * * *
1299 CTAATTCTTTTATAACTTCGGTTCCAGATAGTAGTCGAGATGATCCATTCCTTTGACCAATTTTT
1 CTAGTTCTTTTATAACTTCGGTTCCAGAGAGTATTCAATACGATCCATTCCTTCGACCAATTTTT
* * * **
1364 TGATCTTTCCATGCTCGGGAAATCGCATCATTTAGTCTAAAACTTTTGTCATTTTGTAAAAAGCT
66 TGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAAAAGCT
*
1429 TTTGGTCTTTGAATTAAAATCTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAA
131 TTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAA
Statistics
Matches: 1063, Mismatches: 190, Indels: 38
0.82 0.15 0.03
Matches are distributed among these distances:
213 3 0.00
214 268 0.25
215 22 0.02
216 582 0.55
217 23 0.02
218 161 0.15
219 4 0.00
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (216 bp):
CTAGTTCTTTTATAACTTCGGTTCCAGAGAGTATTCAATACGATCCATTCCTTCGACCAATTTTT
TGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAAAAGCT
TTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACT
TCCGAACTTGTCAAACATTTA
Done.