Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005616.1 Kokia drynarioides strain JFW-HI SEQ_119772, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2124
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36


Found at i:72 original size:31 final size:30

Alignment explanation


    Indices: 15--92  Score: 75
    Period size: 30  Copynumber: 2.5  Consensus size: 30

          5 TCCAGATTCA

                                *      *   
         15 TAAAATATATATTTTTAAATTATTTAATTTT
          1 TAAAA-ATATATTTTTAAATCATTTAAATTT

                     *      *              
         46 TAAAAATATGTTTTTAGATCACTTTAAATTT
          1 TAAAAATATATTTTTAAATCA-TTTAAATTT

             *     *        
         77 CAAAAAAAATATTTTT
          1 -TAAAAATATATTTTT

         93 TTAATAATTT


Statistics
Matches: 38,  Mismatches: 7, Indels: 3
        0.79            0.15        0.06

Matches are distributed among these distances:
  30   13  0.34
  31   13  0.34
  32   12  0.32

ACGTcount: A:0.44, C:0.04, G:0.03, T:0.50


Consensus pattern (30 bp):   
TAAAAATATATTTTTAAATCATTTAAATTT

Found at i:76 original size:32 final size:31

Alignment explanation


    Indices: 15--92  Score: 77
    Period size: 31  Copynumber: 2.5  Consensus size: 31

          5 TCCAGATTCA

                                *          
         15 TAAAATATATATTTTTAAATTATTTAATTTT
          1 TAAAATATATATTTTTAAATCATTTAATTTT

                      *      *          *   
         46 TAAAA-ATATGTTTTTAGATCACTTTAAATTT
          1 TAAAATATATATTTTTAAATCA-TTTAATTTT

            *    * *        
         77 CAAAAAAAATATTTTT
          1 TAAAATATATATTTTT

         93 TTAATAATTT


Statistics
Matches: 38,  Mismatches: 7, Indels: 3
        0.79            0.15        0.06

Matches are distributed among these distances:
  30   13  0.34
  31   17  0.45
  32    8  0.21

ACGTcount: A:0.44, C:0.04, G:0.03, T:0.50


Consensus pattern (31 bp):   
TAAAATATATATTTTTAAATCATTTAATTTT
Done.