Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005624.1 Kokia drynarioides strain JFW-HI SEQ_119782, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2212
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27


Found at i:1176 original size:15 final size:14

Alignment explanation


    Indices: 1156--1186  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 14

       1146 TGCTCACATC

                           
       1156 AAGGGAGTTATAGAT
          1 AAGGGAGTTATA-AT

                          
       1171 AAGGGAGTTATAAT
          1 AAGGGAGTTATAAT

              
       1185 AA
          1 AA

       1187 CAATTAGTAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    4  0.25
  15   12  0.75

ACGTcount: A:0.45, C:0.00, G:0.29, T:0.26


Consensus pattern (14 bp):   
AAGGGAGTTATAAT
Done.