Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005626.1 Kokia drynarioides strain JFW-HI SEQ_119785, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1916
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.36


Found at i:187 original size:11 final size:11

Alignment explanation


    Indices: 168--200  Score: 57
    Period size: 11  Copynumber: 3.0  Consensus size: 11

        158 TTAGGATATT

                       
        168 ATTTATATTTA
          1 ATTTATATTTA

                *      
        179 ATTTGTATTTA
          1 ATTTATATTTA

                       
        190 ATTTATATTTA
          1 ATTTATATTTA

        201 TCTTTTTAGA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  11   20  1.00

ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64


Consensus pattern (11 bp):   
ATTTATATTTA

Found at i:221 original size:13 final size:14

Alignment explanation


    Indices: 191--228  Score: 51
    Period size: 14  Copynumber: 2.7  Consensus size: 14

        181 TTGTATTTAA

                *         
        191 TTTATATTTATCTT
          1 TTTAGATTTATCTT

                          
        205 TTTAGATTTAT-TT
          1 TTTAGATTTATCTT

                       
        218 TTTAGAGTTTA
          1 TTTAGA-TTTA

        229 AAGTGCATCC


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  13    8  0.36
  14   14  0.64

ACGTcount: A:0.24, C:0.03, G:0.08, T:0.66


Consensus pattern (14 bp):   
TTTAGATTTATCTT
Done.