Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005629.1 Kokia drynarioides strain JFW-HI SEQ_119788, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2409
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35


Found at i:892 original size:46 final size:46

Alignment explanation


    Indices: 825--938  Score: 228
    Period size: 46  Copynumber: 2.5  Consensus size: 46

        815 TGTGTTAATA

                                                          
        825 CAAAATGGAACCATCACAAGTTCACAACTGAAGGTTTCAAAATGTC
          1 CAAAATGGAACCATCACAAGTTCACAACTGAAGGTTTCAAAATGTC

                                                          
        871 CAAAATGGAACCATCACAAGTTCACAACTGAAGGTTTCAAAATGTC
          1 CAAAATGGAACCATCACAAGTTCACAACTGAAGGTTTCAAAATGTC

                                  
        917 CAAAATGGAACCATCACAAGTT
          1 CAAAATGGAACCATCACAAGTT

        939 TAATCTAACA


Statistics
Matches: 68,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  46   68  1.00

ACGTcount: A:0.42, C:0.22, G:0.15, T:0.21


Consensus pattern (46 bp):   
CAAAATGGAACCATCACAAGTTCACAACTGAAGGTTTCAAAATGTC
Done.