Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005631.1 Kokia drynarioides strain JFW-HI SEQ_119790, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 669

Length: 1116
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.39


Found at i:347 original size:3 final size:3

Alignment explanation


    Indices: 339--393  Score: 65
    Period size: 3  Copynumber: 18.0  Consensus size: 3

        329 TTACCACCGT

                        * *         *       *                              
        339 TTA TTA TTA ATG TTA TTA ATA TTA ATA TTA TTA TTA TTA TTA TTA TTA
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA

                    
        387 CTTA TTA
          1 -TTA TTA

        394 ATAATAAATT


Statistics
Matches: 43,  Mismatches: 8, Indels: 2
        0.81            0.15        0.04

Matches are distributed among these distances:
   3   40  0.93
   4    3  0.07

ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60


Consensus pattern (3 bp):   
TTA

Found at i:1071 original size:17 final size:17

Alignment explanation


    Indices: 1044--1106  Score: 56
    Period size: 18  Copynumber: 3.6  Consensus size: 17

       1034 TTTAATTTAA

                              
       1044 TTAAGTTTTAAATCAATT
          1 TTAA-TTTTAAATCAATT

                        *  * 
       1062 TTAATTTT-AATTAAAT
          1 TTAATTTTAAATCAATT

                *      *      
       1078 TTAAATTTAAAGCAAATT
          1 TTAATTTTAAATC-AATT

             *         
       1096 TAAATTTTAAA
          1 TTAATTTTAAA

       1107 AGATAAATTT


Statistics
Matches: 35,  Mismatches: 8, Indels: 4
        0.74            0.17        0.09

Matches are distributed among these distances:
  16   13  0.37
  17    6  0.17
  18   16  0.46

ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48


Consensus pattern (17 bp):   
TTAATTTTAAATCAATT
Done.