Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005634.1 Kokia drynarioides strain JFW-HI SEQ_119794, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2018
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.33


Found at i:1294 original size:55 final size:55

Alignment explanation


    Indices: 1228--1340  Score: 217
    Period size: 55  Copynumber: 2.1  Consensus size: 55

       1218 TTCAAAAATA

                                                                   
       1228 TTTCTTCTAAAATTTAAACAATAATAAGTATTGGTGGAGTGTTAAAAAACTTGTG
          1 TTTCTTCTAAAATTTAAACAATAATAAGTATTGGTGGAGTGTTAAAAAACTTGTG

                  *                                                
       1283 TTTCTTTTAAAATTTAAACAATAATAAGTATTGGTGGAGTGTTAAAAAACTTGTG
          1 TTTCTTCTAAAATTTAAACAATAATAAGTATTGGTGGAGTGTTAAAAAACTTGTG

               
       1338 TTT
          1 TTT

       1341 AAATCTTATT


Statistics
Matches: 57,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  55   57  1.00

ACGTcount: A:0.37, C:0.06, G:0.16, T:0.41


Consensus pattern (55 bp):   
TTTCTTCTAAAATTTAAACAATAATAAGTATTGGTGGAGTGTTAAAAAACTTGTG
Done.