Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005639.1 Kokia drynarioides strain JFW-HI SEQ_119802, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5562
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.35


Found at i:788 original size:18 final size:18

Alignment explanation


    Indices: 765--807  Score: 52
    Period size: 18  Copynumber: 2.4  Consensus size: 18

        755 GAATAGATTT

                               
        765 TTAATTAAATAAATTT-AA
          1 TTAATTAAA-AAATTTAAA

                  *    *      
        783 TTAATTGAAAATTTTAAA
          1 TTAATTAAAAAATTTAAA

                   
        801 TTAATTA
          1 TTAATTA

        808 CATCTTGAAC


Statistics
Matches: 21,  Mismatches: 3, Indels: 2
        0.81            0.12        0.08

Matches are distributed among these distances:
  17    5  0.24
  18   16  0.76

ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47


Consensus pattern (18 bp):   
TTAATTAAAAAATTTAAA
Done.