Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005640.1 Kokia drynarioides strain JFW-HI SEQ_119803, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 888

Length: 1481
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.35


Found at i:101 original size:58 final size:58

Alignment explanation


    Indices: 5--128  Score: 214
    Period size: 58  Copynumber: 2.1  Consensus size: 58

          1 AATT

                                                                       
          5 ACCAAAATATAATATAAAAAATAATTAATTATCAAAATAATATCCCTATCATATTATTG
          1 ACCAAAATATAATATAAAAAATAATTAATTATCAAAATAATATCCC-ATCATATTATTG

                                            *                        *
         64 ACCAAAATATAATATAAAAAA-AATTAATTATGAAAATAATATCCCATCATATTATTT
          1 ACCAAAATATAATATAAAAAATAATTAATTATCAAAATAATATCCCATCATATTATTG

                    
        121 ACCAAAAT
          1 ACCAAAAT

        129 GGTACAAAAT


Statistics
Matches: 63,  Mismatches: 2, Indels: 2
        0.94            0.03        0.03

Matches are distributed among these distances:
  57   19  0.30
  58   23  0.37
  59   21  0.33

ACGTcount: A:0.54, C:0.12, G:0.02, T:0.32


Consensus pattern (58 bp):   
ACCAAAATATAATATAAAAAATAATTAATTATCAAAATAATATCCCATCATATTATTG
Done.