Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005641.1 Kokia drynarioides strain JFW-HI SEQ_119804, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 715

Length: 1193
ACGTcount: A:0.41, C:0.09, G:0.13, T:0.37


Found at i:1054 original size:30 final size:33

Alignment explanation


    Indices: 1014--1077  Score: 89
    Period size: 30  Copynumber: 2.0  Consensus size: 33

       1004 AGCTTATATC

                                             
       1014 TTTATAATTTTTAAA-AAATT-AAAT-TAATTT
          1 TTTATAATTTTTAAAGAAATTAAAATGTAATTT

                 *           *               
       1044 TTTATTATTTTTAAAGAGATTAAAATGTAATTT
          1 TTTATAATTTTTAAAGAAATTAAAATGTAATTT

             
       1077 T
          1 T

       1078 AATTTAAAAA


Statistics
Matches: 29,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  30   14  0.48
  31    4  0.14
  32    4  0.14
  33    7  0.24

ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53


Consensus pattern (33 bp):   
TTTATAATTTTTAAAGAAATTAAAATGTAATTT

Done.