Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005655.1 Kokia drynarioides strain JFW-HI SEQ_119825, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5175
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31


Found at i:3416 original size:34 final size:34

Alignment explanation


    Indices: 3378--3443  Score: 89
    Period size: 34  Copynumber: 1.9  Consensus size: 34

       3368 CTGTAGTATA

                             *                 
       3378 ATTGTCCCTGCAT-TATTAATGTCATTGCATTTTT
          1 ATTGTCCCTGCATCTA-CAATGTCATTGCATTTTT

                  *           *             
       3412 ATTGTCGCTGCATCTACATTGTCATTGCATTT
          1 ATTGTCCCTGCATCTACAATGTCATTGCATTT

       3444 CCATATATAT


Statistics
Matches: 28,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
  34   26  0.93
  35    2  0.07

ACGTcount: A:0.20, C:0.20, G:0.14, T:0.47


Consensus pattern (34 bp):   
ATTGTCCCTGCATCTACAATGTCATTGCATTTTT

Found at i:3417 original size:17 final size:17

Alignment explanation


    Indices: 3386--3443  Score: 53
    Period size: 17  Copynumber: 3.4  Consensus size: 17

       3376 TAATTGTCCC

                  *   *      
       3386 TGCATTATTAATGTCAT
          1 TGCATTTTTATTGTCAT

                           **
       3403 TGCATTTTTATTGTCGC
          1 TGCATTTTTATTGTCAT

                 * **        
       3420 TGCATCTACATTGTCAT
          1 TGCATTTTTATTGTCAT

                   
       3437 TGCATTT
          1 TGCATTT

       3444 CCATATATAT


Statistics
Matches: 31,  Mismatches: 10, Indels: 0
        0.76            0.24        0.00

Matches are distributed among these distances:
  17   31  1.00

ACGTcount: A:0.21, C:0.17, G:0.14, T:0.48


Consensus pattern (17 bp):   
TGCATTTTTATTGTCAT
Done.