genome.fa.s5667.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005667.1 Kokia drynarioides strain JFW-HI SEQ_119842, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60357

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
924--1031	31	3.5	30	75	7	99	30	11	12	46	1.76
2553--2643	34	2.7	34	87	0	128	39	9	13	37	1.78
3443--3524	11	7.0	11	72	8	56	42	3	3	50	1.37
3442--3524	17	4.7	17	74	12	69	42	3	4	49	1.41
3443--3524	6	13.8	6	72	12	71	42	3	3	50	1.37
4253--4312	12	4.6	13	78	13	52	61	1	3	33	1.22
5431--5716	29	9.9	29	70	13	126	32	23	3	40	1.72
5433--5716	87	3.3	86	82	5	295	32	23	3	40	1.71
5616--5764	59	2.6	59	81	8	180	34	23	2	40	1.66
5611--5809	58	3.4	58	79	10	176	34	23	2	40	1.66
11869--11938	25	2.8	25	86	4	70	12	28	21	37	1.90
12425--12464	21	1.9	21	89	0	62	37	10	32	20	1.85
16333--16883	49	11.2	48	72	8	360	39	20	25	13	1.90
16536--16883	98	3.6	98	85	4	436	39	21	26	12	1.89
17273--17333	17	3.4	18	72	12	54	40	4	6	47	1.51
18240--18344	30	3.5	29	72	14	79	34	19	0	45	1.57
30004--30546	49	11.0	49	74	4	403	39	22	24	13	1.89
30001--30546	98	5.6	98	83	3	587	39	22	24	13	1.90
30001--30546	194	2.8	195	81	4	596	39	22	24	13	1.90
30447--30667	122	1.8	122	84	2	300	41	24	23	10	1.86
31063--31123	11	5.2	11	74	16	52	40	3	3	52	1.34
31059--31123	6	10.8	6	74	12	62	40	3	3	53	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31836--31905	3	23.0	3	76	13	63	61	2	2	32	1.25
31836--31914	12	6.2	13	77	14	74	63	2	2	31	1.21
31884--31927	15	2.9	15	86	6	54	72	0	4	22	1.02
31836--31914	18	4.5	18	72	22	62	63	2	2	31	1.21
33042--33124	28	2.9	27	73	8	76	31	25	3	39	1.73
33104--33498	30	13.5	29	68	10	171	33	26	3	36	1.72
33408--33536	59	2.2	60	84	1	161	29	26	4	39	1.76
33046--33499	29	15.6	29	68	11	174	33	25	3	37	1.73
33573--33633	28	2.1	29	81	3	70	29	31	9	29	1.89
35944--36020	39	2.0	39	97	0	145	36	12	24	25	1.92
37476--37503	2	14.0	2	100	0	56	0	0	50	50	1.00
39749--39794	15	3.1	15	76	14	51	2	23	0	73	0.94
42795--42854	31	1.9	31	82	0	75	40	6	3	50	1.45
43159--43384	113	2.0	113	97	0	425	34	8	7	50	1.60
43377--43488	27	4.1	27	77	15	113	24	7	9	58	1.55
43355--43608	58	4.3	58	82	5	285	25	10	10	53	1.67
43355--43608	118	2.1	119	82	6	302	25	10	10	53	1.67
43458--43521	33	1.9	33	84	9	85	23	7	10	57	1.58
43744--43922	90	2.0	88	81	8	211	45	9	18	26	1.80
49219--49243	13	1.9	13	100	0	50	36	8	8	48	1.62
50845--50955	11	9.5	11	71	13	78	68	5	0	26	1.11
50893--50953	3	21.7	3	79	12	58	72	4	0	22	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50893--50953	14	4.3	15	78	14	67	72	4	0	22	1.04
50899--50968	22	3.2	22	85	0	95	72	8	0	18	1.09

Tables:   1

The End!