Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005676.1 Kokia drynarioides strain JFW-HI SEQ_119862, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2273
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38


Found at i:1292 original size:20 final size:21

Alignment explanation


    Indices: 1267--1310  Score: 63
    Period size: 22  Copynumber: 2.1  Consensus size: 21

       1257 TTTGATACTC

                                 
       1267 TTTTTTA-AATGCCTTGATTT
          1 TTTTTTACAATGCCTTGATTT

                         *        
       1287 TTTTTTACCAATGTCTTGATTT
          1 TTTTTTA-CAATGCCTTGATTT

              
       1309 TT
          1 TT

       1311 CTTCTGCCAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  20    7  0.33
  22   14  0.67

ACGTcount: A:0.18, C:0.11, G:0.09, T:0.61


Consensus pattern (21 bp):   
TTTTTTACAATGCCTTGATTT
Done.