Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005678.1 Kokia drynarioides strain JFW-HI SEQ_119864, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2479
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.34


Found at i:448 original size:20 final size:21

Alignment explanation


    Indices: 408--451  Score: 63
    Period size: 22  Copynumber: 2.1  Consensus size: 21

        398 ATGGCAGAAG

                                  
        408 AAAAATCAAGACATTGGTAAAA
          1 AAAAATCAAGACATT-GTAAAA

                      *          
        430 AAAAATCAAGGCATT-TAAAA
          1 AAAAATCAAGACATTGTAAAA

              
        450 AA
          1 AA

        452 GAGTATCAAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  20    7  0.33
  22   14  0.67

ACGTcount: A:0.61, C:0.09, G:0.11, T:0.18


Consensus pattern (21 bp):   
AAAAATCAAGACATTGTAAAA

Found at i:2246 original size:15 final size:16

Alignment explanation


    Indices: 2226--2255  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       2216 AAAGTTAAAA

                            
       2226 TATTTTTAA-AATTTT
          1 TATTTTTAAGAATTTT

                           
       2241 TATTTTTAAGAATTT
          1 TATTTTTAAGAATTT

       2256 AGTTTTTTAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    9  0.64
  16    5  0.36

ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63


Consensus pattern (16 bp):   
TATTTTTAAGAATTTT
Done.