genome.fa.s5688.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005688.1 Kokia drynarioides strain JFW-HI SEQ_119884, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148718

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2419--2446	6	4.7	6	100	0	56	17	0	17	64	1.30
2592--2684	26	3.5	26	77	2	87	54	11	0	33	1.37
5427--5478	26	2.0	26	100	0	104	19	23	3	53	1.61
8806--8843	20	1.9	20	100	0	76	31	2	7	57	1.41
8983--9076	6	15.0	6	73	18	59	62	12	1	23	1.36
8989--9103	32	3.4	32	82	13	140	61	12	1	24	1.40
8982--9103	38	3.4	37	79	14	155	61	13	1	23	1.41
9033--9097	20	3.4	19	66	18	53	60	13	1	24	1.43
10872--10958	43	2.0	43	100	0	174	18	13	27	40	1.88
12346--12436	11	8.5	11	69	7	53	5	7	20	64	1.39
12370--12461	24	4.1	23	82	9	102	6	7	18	67	1.37
12391--12462	20	3.4	20	80	14	90	9	8	15	66	1.43
12365--12467	44	2.4	42	88	4	143	7	7	18	66	1.42
12380--12499	24	5.3	23	77	14	72	8	5	20	65	1.40
12444--12516	24	3.3	23	77	9	71	9	2	23	64	1.37
12477--12516	20	2.0	21	90	5	64	7	0	27	65	1.20
13912--13952	17	2.4	18	80	12	50	24	21	0	53	1.46
21179--21204	7	3.7	7	100	0	52	15	15	0	69	1.20
23958--23989	2	16.0	2	100	0	64	50	0	0	50	1.00
39030--39430	49	8.2	49	74	8	246	39	16	23	20	1.92
40086--40126	12	3.5	12	90	3	66	19	43	19	17	1.88
53537--53597	24	2.5	24	83	0	77	31	22	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53579--53682	27	3.8	27	91	3	156	35	22	18	24	1.95
56250--56288	14	2.7	15	84	8	53	38	20	10	30	1.86
81844--81940	29	3.3	29	70	16	83	31	5	28	34	1.79
81775--82046	30	9.5	30	71	16	186	33	5	27	33	1.79
81718--82046	59	5.7	59	75	11	238	33	4	27	34	1.77
81937--81988	20	2.5	21	84	3	70	32	3	32	30	1.76
81917--82018	50	2.0	50	94	0	177	32	2	31	33	1.73
83143--83217	6	12.8	6	73	10	66	54	4	0	41	1.19
83144--83203	29	2.1	29	87	6	86	53	3	0	43	1.17
83143--83253	17	6.4	17	82	7	118	53	6	0	40	1.26
94789--94901	59	1.9	60	87	1	165	44	7	18	30	1.76
98747--99388	336	1.9	330	83	6	830	45	15	16	22	1.85
106156--106198	22	2.0	22	95	0	77	37	25	9	27	1.87
111590--111651	28	2.2	28	91	5	99	24	27	22	25	2.00
111444--111643	70	2.9	70	81	5	226	26	23	23	27	2.00
115509--115555	22	2.1	22	92	0	76	38	27	8	25	1.85
118939--118990	21	2.5	21	77	17	54	9	11	0	78	0.95
121698--121808	4	27.5	4	78	5	98	65	3	2	27	1.23
126815--126857	19	2.4	18	81	11	52	39	0	34	25	1.56
127702--127747	23	2.0	23	86	0	65	43	15	4	36	1.66
129779--129909	56	2.3	57	92	1	210	31	6	27	34	1.83
129694--130101	59	7.1	57	76	11	255	33	5	25	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129892--130002	30	3.7	30	72	10	102	31	2	25	40	1.70
129694--130108	29	14.4	28	74	10	218	33	5	25	35	1.80
130711--130787	17	4.5	17	83	6	77	51	1	6	40	1.36
130726--130840	6	19.7	6	74	8	85	54	5	2	37	1.37
130744--130840	17	5.6	17	81	8	72	55	6	1	37	1.32
130801--130845	24	1.9	24	86	4	65	60	8	0	31	1.28
136445--136679	29	8.4	28	66	21	109	31	5	25	36	1.80
136507--136679	29	5.9	29	70	12	129	32	5	26	35	1.80
136507--136677	59	2.9	58	77	12	179	32	5	25	36	1.80
136544--136797	88	2.9	88	76	5	221	33	6	24	36	1.81
136574--136855	29	9.7	27	69	17	83	34	4	23	37	1.74
136691--136824	59	2.3	58	82	6	164	33	5	23	36	1.80
136721--136823	29	3.5	29	90	1	152	33	3	26	35	1.75
136781--136873	29	3.2	30	77	7	93	38	1	19	40	1.59
137761--137895	35	3.7	35	80	9	144	55	5	2	36	1.37
137776--137866	6	15.7	6	76	11	73	54	4	2	38	1.32
137761--137895	17	7.5	17	77	12	117	55	5	2	36	1.37
138505--139779	208	6.1	208	86	2	1596	22	22	17	37	1.94
138303--139779	416	3.6	414	84	4	1722	22	22	17	37	1.94
139880--140100	78	2.8	78	87	1	300	24	22	31	22	1.98
139890--140100	39	5.4	39	75	8	198	25	22	30	21	1.99
140240--140334	41	2.3	41	87	0	127	32	17	17	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140491--140748	50	5.1	50	76	5	200	17	30	16	35	1.92
140488--140750	101	2.6	102	84	3	320	17	30	16	36	1.92
142241--142343	54	2.0	54	84	5	140	30	16	11	41	1.84
146748--146802	22	2.6	20	77	11	56	36	3	0	60	1.15
146748--146788	22	1.9	22	85	5	57	41	2	0	56	1.13

Tables:   1

The End!