Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005689.1 Kokia drynarioides strain JFW-HI SEQ_119888, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5357
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.28


Found at i:1475 original size:22 final size:22

Alignment explanation


    Indices: 1449--1492  Score: 54
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1439 AGAAATTAAC

                                   
       1449 GAAA-TGAAAACACTAAAAATAA
          1 GAAATTGAAAA-ACTAAAAATAA

                     *      *     
       1471 GAAATTGAAGAACTAATAATAA
          1 GAAATTGAAAAACTAAAAATAA

       1493 ATAAATAGAC


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  22   14  0.74
  23    5  0.26

ACGTcount: A:0.64, C:0.07, G:0.11, T:0.18


Consensus pattern (22 bp):   
GAAATTGAAAAACTAAAAATAA
Done.