Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005691.1 Kokia drynarioides strain JFW-HI SEQ_119893, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 25487
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.35

Warning! 32 characters in sequence are not A, C, G, or T


Found at i:1563 original size:25 final size:23

Alignment explanation


    Indices: 1522--1567  Score: 65
    Period size: 25  Copynumber: 1.9  Consensus size: 23

       1512 CCAATTAGGG

                                   
       1522 AATTATTATTTAGATTTAATTCA
          1 AATTATTATTTAGATTTAATTCA

                    *              
       1545 AATTATCTTTTTAGAATTTAATT
          1 AATTAT-TATTTAG-ATTTAATT

       1568 TGGATCCAAC


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  23    6  0.30
  24    6  0.30
  25    8  0.40

ACGTcount: A:0.37, C:0.04, G:0.04, T:0.54


Consensus pattern (23 bp):   
AATTATTATTTAGATTTAATTCA

Found at i:6371 original size:20 final size:21

Alignment explanation


    Indices: 6335--6378  Score: 56
    Period size: 20  Copynumber: 2.1  Consensus size: 21

       6325 TTTGTTTGGT

                                 
       6335 ATTTTACAAATTAT-AAAATA
          1 ATTTTACAAATTATAAAAATA

                         *        
       6355 ATTTTA-AAATTTTTAAAAATA
          1 ATTTTACAAA-TTATAAAAATA

               
       6376 ATT
          1 ATT

       6379 AATATAAAAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  19    3  0.14
  20    9  0.43
  21    9  0.43

ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45


Consensus pattern (21 bp):   
ATTTTACAAATTATAAAAATA
Done.