Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005696.1 Kokia drynarioides strain JFW-HI SEQ_119905, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5912
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:2698 original size:15 final size:15

Alignment explanation


    Indices: 2680--2710  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       2670 TTATTTTAGC

                           
       2680 TTTAACTTAGATTAA
          1 TTTAACTTAGATTAA

                 *         
       2695 TTTAATTTAGATTAA
          1 TTTAACTTAGATTAA

             
       2710 T
          1 T

       2711 ACTTGAGAAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52


Consensus pattern (15 bp):   
TTTAACTTAGATTAA
Done.