Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005701.1 Kokia drynarioides strain JFW-HI SEQ_119913, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 880

Length: 1468
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26


Found at i:286 original size:31 final size:32

Alignment explanation


    Indices: 223--290  Score: 86
    Period size: 34  Copynumber: 2.1  Consensus size: 32

        213 TTATTGAAAC

                                              
        223 AAAAAAAACAAAATAAAACCATTGGCAAAACTAA
          1 AAAAAAAACAAAATAAAACCA-T-GCAAAACTAA

                                      *      
        257 AAAAAAAACAAAACTAAAACCA-GC-TAACTAA
          1 AAAAAAAACAAAA-TAAAACCATGCAAAACTAA

               
        288 AAA
          1 AAA

        291 CCAGCAAATA


Statistics
Matches: 32,  Mismatches: 1, Indels: 5
        0.84            0.03        0.13

Matches are distributed among these distances:
  31    9  0.28
  32    2  0.06
  34   13  0.41
  35    8  0.25

ACGTcount: A:0.69, C:0.16, G:0.04, T:0.10


Consensus pattern (32 bp):   
AAAAAAAACAAAATAAAACCATGCAAAACTAA

Found at i:1057 original size:31 final size:32

Alignment explanation


    Indices: 994--1061  Score: 86
    Period size: 34  Copynumber: 2.1  Consensus size: 32

        984 TTATTGAAAC

                                              
        994 AAAAAAAACAAAATAAAACCATTGGCAAAACTAA
          1 AAAAAAAACAAAATAAAACCA-T-GCAAAACTAA

                                      *      
       1028 AAAAAAAACAAAACTAAAACCA-GC-TAACTAA
          1 AAAAAAAACAAAA-TAAAACCATGCAAAACTAA

               
       1059 AAA
          1 AAA

       1062 CCAACAAATA


Statistics
Matches: 32,  Mismatches: 1, Indels: 5
        0.84            0.03        0.13

Matches are distributed among these distances:
  31    9  0.28
  32    2  0.06
  34   13  0.41
  35    8  0.25

ACGTcount: A:0.69, C:0.16, G:0.04, T:0.10


Consensus pattern (32 bp):   
AAAAAAAACAAAATAAAACCATGCAAAACTAA
Done.