Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005707.1 Kokia drynarioides strain JFW-HI SEQ_119928, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 964

Length: 1608
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.39


Found at i:686 original size:21 final size:21

Alignment explanation


    Indices: 662--701  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        652 AAAATGAAAA

                    **           
        662 AAAAATTATTAAAAAAATTTG
          1 AAAAATTAAAAAAAAAATTTG

                               
        683 AAAAATTAAAAAAAAAATT
          1 AAAAATTAAAAAAAAAATT

        702 AGTATATTTA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.70, C:0.00, G:0.03, T:0.28


Consensus pattern (21 bp):   
AAAAATTAAAAAAAAAATTTG

Found at i:730 original size:17 final size:17

Alignment explanation


    Indices: 708--745  Score: 58
    Period size: 17  Copynumber: 2.2  Consensus size: 17

        698 AATTAGTATA

                       *     
        708 TTTATTTTCAATTTTAT
          1 TTTATTTTCAAATTTAT

                    *        
        725 TTTATTTTTAAATTTAT
          1 TTTATTTTCAAATTTAT

                
        742 TTTA
          1 TTTA

        746 ATTATGCCAT


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  17   19  1.00

ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71


Consensus pattern (17 bp):   
TTTATTTTCAAATTTAT
Done.