Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005709.1 Kokia drynarioides strain JFW-HI SEQ_119933, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2565
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.29


Found at i:1888 original size:21 final size:21

Alignment explanation


    Indices: 1864--1904  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1854 TAGGGTCTAT

                         *       
       1864 TTGCCCCGGAGGAGTAGAGTC
          1 TTGCCCCGGAGGAATAGAGTC

                  *             
       1885 TTGCCCGGGAGGAATAGAGT
          1 TTGCCCCGGAGGAATAGAGT

       1905 ATCGCGATGA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.22, C:0.20, G:0.39, T:0.20


Consensus pattern (21 bp):   
TTGCCCCGGAGGAATAGAGTC
Done.