Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000571.1 Kokia drynarioides strain JFW-HI SEQ_111491, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13843
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39


Found at i:9080 original size:29 final size:29

Alignment explanation


    Indices: 9014--9094  Score: 72
    Period size: 31  Copynumber: 2.7  Consensus size: 29

       9004 TCAAAGCTAT

                *             *        *  *
       9014 ACATGAACTTTAATTTAACGTGTAATTGTAT
          1 ACATAAACTTTAATTT--GGTGTAATTATAC

                                         
       9045 ACATAAACTTTAATTTGGTGTAATTATAC
          1 ACATAAACTTTAATTTGGTGTAATTATAC

              *       *          
       9074 ACGTAAAGCTCTAATTGTGGT
          1 ACATAAA-CTTTAATT-TGGT

       9095 TCAAATTTAT


Statistics
Matches: 42,  Mismatches: 6, Indels: 4
        0.81            0.12        0.08

Matches are distributed among these distances:
  29   16  0.38
  30    7  0.17
  31   19  0.45

ACGTcount: A:0.35, C:0.11, G:0.15, T:0.40


Consensus pattern (29 bp):   
ACATAAACTTTAATTTGGTGTAATTATAC

Found at i:11621 original size:6 final size:6

Alignment explanation


    Indices: 11607--11664  Score: 107
    Period size: 6  Copynumber: 9.7  Consensus size: 6

      11597 AGTCCGCCAA

                *                                                  
      11607 CAGCTC CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC
          1 CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC

                       
      11655 CAGCAC CAGC
          1 CAGCAC CAGC

      11665 TTCTACTGCA


Statistics
Matches: 51,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   6   51  1.00

ACGTcount: A:0.31, C:0.50, G:0.17, T:0.02


Consensus pattern (6 bp):   
CAGCAC

Done.