Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005722.1 Kokia drynarioides strain JFW-HI SEQ_119954, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1901
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29


Found at i:1810 original size:150 final size:150

Alignment explanation


    Indices: 1600--1901  Score: 523
    Period size: 150  Copynumber: 2.0  Consensus size: 150

       1590 CCATTTTGCC

                     *          *                                 *          
       1600 TAACACATTGCCTTAAGTTCTCAACATAAATAGTTTATTAAACCTACTAATAAAGAGTAAATGGT
          1 TAACACATTACCTTAAGTTCCCAACATAAATAGTTTATTAAACCTACTAATAAAAAGTAAATGGT

                               *              *                              
       1665 TGACTTGACTTGGATCACCTTCAAGACCACACCATTCACACCGACACTAAGAATCTGTAATGGTT
         66 TGACTTGACTTGGATCACCCTCAAGACCACACCACTCACACCGACACTAAGAATCTGTAATGGTT

                                
       1730 AAAAAGGGCGTAGGTGAGCT
        131 AAAAAGGGCGTAGGTGAGCT

                           *                                                 
       1750 TAACACATTACCTTAGGTTCCCAACATAAATAGTTTATTAAACCTACTAATAAAAAGTAAATGGT
          1 TAACACATTACCTTAAGTTCCCAACATAAATAGTTTATTAAACCTACTAATAAAAAGTAAATGGT

             *                           *                                   
       1815 TTACTTGACTTGGATCACCCTCAAGACCATACCACTCACACCGACACTAAGAATCTGTAATGGTT
         66 TGACTTGACTTGGATCACCCTCAAGACCACACCACTCACACCGACACTAAGAATCTGTAATGGTT

                       *        
       1880 AAAAAGGGCGTGGGTGAGCT
        131 AAAAAGGGCGTAGGTGAGCT

              
       1900 TA
          1 TA


Statistics
Matches: 143,  Mismatches: 9, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
 150  143  1.00

ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27


Consensus pattern (150 bp):   
TAACACATTACCTTAAGTTCCCAACATAAATAGTTTATTAAACCTACTAATAAAAAGTAAATGGT
TGACTTGACTTGGATCACCCTCAAGACCACACCACTCACACCGACACTAAGAATCTGTAATGGTT
AAAAAGGGCGTAGGTGAGCT
Done.