genome.fa.s5723.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005723.1 Kokia drynarioides strain JFW-HI SEQ_119955, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48930

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14746--14783	19	1.9	19	89	5	58	0	23	5	71	1.07
19163--19295	59	2.3	58	83	7	162	43	1	3	51	1.29
19260--19310	25	2.0	26	88	11	79	50	3	0	45	1.20
19454--19499	16	2.9	16	90	6	67	30	21	4	43	1.72
19464--19509	16	2.9	16	90	6	67	30	23	2	43	1.66
19979--20009	13	2.3	14	94	5	55	77	0	0	22	0.77
20479--20541	2	32.0	2	90	3	101	46	0	0	53	1.00
21569--21998	30	14.4	30	78	8	290	34	25	3	36	1.73
21569--22004	89	4.9	88	75	9	328	34	25	3	36	1.73
21935--21998	31	2.1	31	90	0	101	32	23	0	43	1.54
25754--25794	22	2.0	20	85	9	55	85	2	7	4	0.81
25833--25864	16	1.9	17	93	6	57	78	3	18	0	0.89
27646--28138	50	10.0	49	77	6	336	32	15	32	20	1.93
27646--28144	196	2.5	196	84	3	628	32	15	31	20	1.93
27840--28116	147	1.9	148	79	6	321	33	12	31	21	1.91
28382--28474	41	2.3	41	92	0	150	30	19	15	35	1.92
28464--29334	39	22.5	38	69	11	382	23	32	19	24	1.98
28503--29265	117	6.6	113	72	9	534	23	31	19	24	1.98
28659--29365	78	9.1	78	83	2	798	24	32	18	24	1.97
29472--29549	17	4.7	18	66	22	53	39	10	28	21	1.86
29439--29573	49	2.8	49	96	1	245	37	12	25	23	1.90
31428--31599	61	2.9	59	81	9	177	33	22	2	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31369--31857	30	16.5	28	71	11	221	34	24	4	36	1.75
31488--31680	88	2.1	91	83	3	239	33	21	4	40	1.73
31527--31857	60	5.6	59	76	7	251	32	24	5	37	1.78
31937--31981	22	2.1	22	83	4	56	20	4	4	71	1.21
33554--33598	23	2.0	23	86	0	63	24	28	2	44	1.66
34998--35055	3	19.7	3	92	3	100	67	0	1	31	1.01
35484--35513	12	2.5	12	94	0	51	30	26	3	40	1.72
42201--42257	4	14.2	4	92	0	60	40	0	10	49	1.37
42208--42252	18	2.5	18	100	0	90	35	0	13	51	1.41
42201--42257	22	2.6	22	88	0	96	40	0	10	49	1.37
43286--43324	20	2.0	20	94	0	69	53	15	17	12	1.72
43340--43393	23	2.4	23	84	9	67	38	16	14	29	1.89
44166--44223	30	1.9	30	82	6	73	39	13	5	41	1.67
48847--48889	6	7.2	6	89	0	59	48	0	30	20	1.50

Tables:   1

The End!