Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005725.1 Kokia drynarioides strain JFW-HI SEQ_119957, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3232
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.41


Found at i:1450 original size:33 final size:33

Alignment explanation


    Indices: 1408--1472  Score: 112
    Period size: 33  Copynumber: 2.0  Consensus size: 33

       1398 CCGACAAAGT

                          *                  
       1408 GCTTGATGCTCTCCGAGAAAATAGAATAAATAC
          1 GCTTGATGCTCTCCAAGAAAATAGAATAAATAC

                                    *       
       1441 GCTTGATGCTCTCCAAGAAAATAGGATAAATA
          1 GCTTGATGCTCTCCAAGAAAATAGAATAAATA

       1473 TGGAGGCTTT


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  33   30  1.00

ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25


Consensus pattern (33 bp):   
GCTTGATGCTCTCCAAGAAAATAGAATAAATAC

Found at i:2179 original size:25 final size:25

Alignment explanation


    Indices: 2141--2189  Score: 64
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       2131 AAAATTTTTA

                          **         
       2141 TTTTACATTTATTTGTATTTAATAT
          1 TTTTACATTTATTTAAATTTAATAT

                                     
       2166 TTTTA-ATTTAATTTAAATTTAATA
          1 TTTTACATTT-ATTTAAATTTAATA

       2190 AATTACAAAT


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  24    4  0.19
  25   17  0.81

ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61


Consensus pattern (25 bp):   
TTTTACATTTATTTAAATTTAATAT
Done.