Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005728.1 Kokia drynarioides strain JFW-HI SEQ_119966, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 853

Length: 1423
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37


Found at i:1397 original size:10 final size:11

Alignment explanation


    Indices: 1363--1398  Score: 56
    Period size: 11  Copynumber: 3.3  Consensus size: 11

       1353 GTCTCTTATT

                       
       1363 AAATATTATAA
          1 AAATATTATAA

                        
       1374 AAATATTCATAA
          1 AAATATT-ATAA

                       
       1386 AAAT-TTATAA
          1 AAATATTATAA

               
       1396 AAA
          1 AAA

       1399 AAATTCTAAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
  10    7  0.29
  11    9  0.38
  12    8  0.33

ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33


Consensus pattern (11 bp):   
AAATATTATAA

Found at i:1398 original size:23 final size:23

Alignment explanation


    Indices: 1362--1423  Score: 67
    Period size: 22  Copynumber: 2.7  Consensus size: 23

       1352 CGTCTCTTAT

                            *        
       1362 TAAATATTAT-AAAAATATTCATAA
          1 TAAAT-TTATAAAAAAAATTC-TAA

                                   
       1386 -AAATTTATAAAAAAAATTCTAA
          1 TAAATTTATAAAAAAAATTCTAA

                    *        
       1408 TAAA-TTAAAAAAAAAA
          1 TAAATTTATAAAAAAAA


Statistics
Matches: 34,  Mismatches: 2, Indels: 6
        0.81            0.05        0.14

Matches are distributed among these distances:
  22   18  0.53
  23   16  0.47

ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31


Consensus pattern (23 bp):   
TAAATTTATAAAAAAAATTCTAA

Done.