Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005731.1 Kokia drynarioides strain JFW-HI SEQ_119969, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 709

Length: 1183
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39


Found at i:898 original size:55 final size:55

Alignment explanation


    Indices: 837--942  Score: 160
    Period size: 55  Copynumber: 1.9  Consensus size: 55

        827 TGTTATGCTG

                                          *   *           *         
        837 GAATATTGCTT-TATTTGAATCGATTGTTTTTATGTTTAAATCAATTGTCATGTTA
          1 GAATATTGCTTCT-TTTGAATCGATTGTTTATATATTTAAATCAATCGTCATGTTA

                                *                              
        892 GAATATTGCTTCTTTTGAATTGATTGTTTATATATTTAAATCAATCGTCAT
          1 GAATATTGCTTCTTTTGAATCGATTGTTTATATATTTAAATCAATCGTCAT

        943 ATTGAAATAC


Statistics
Matches: 46,  Mismatches: 4, Indels: 2
        0.88            0.08        0.04

Matches are distributed among these distances:
  55   45  0.98
  56    1  0.02

ACGTcount: A:0.28, C:0.08, G:0.13, T:0.50


Consensus pattern (55 bp):   
GAATATTGCTTCTTTTGAATCGATTGTTTATATATTTAAATCAATCGTCATGTTA
Done.