Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005744.1 Kokia drynarioides strain JFW-HI SEQ_119988, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3353
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33


Found at i:1813 original size:15 final size:17

Alignment explanation


    Indices: 1793--1824  Score: 50
    Period size: 15  Copynumber: 2.0  Consensus size: 17

       1783 TGAAAAGAAT

                             
       1793 TAATCAA-AAGA-TTAG
          1 TAATCAATAAGAGTTAG

                             
       1808 TAATCAATAAGAGTTAG
          1 TAATCAATAAGAGTTAG

       1825 AAAAGAAACA


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  15    7  0.47
  16    4  0.27
  17    4  0.27

ACGTcount: A:0.50, C:0.06, G:0.16, T:0.28


Consensus pattern (17 bp):   
TAATCAATAAGAGTTAG
Done.