Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005751.1 Kokia drynarioides strain JFW-HI SEQ_120000, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5167
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34


Found at i:419 original size:53 final size:53

Alignment explanation


    Indices: 334--488  Score: 242
    Period size: 53  Copynumber: 2.9  Consensus size: 53

        324 GTAAATGCAA

                                     *                            
        334 AAAGGTCCGATGACT-TAGTGTCATTGTGAGTTATATGAATCCTATTACGAATT
          1 AAAGGTCCGATGACTCT-GTGTCATCGTGAGTTATATGAATCCTATTACGAATT

                                       *                 * * *   
        387 AAAGGTCCGATGACTCTGTGTCATCGTAAGTTATATGAATCCTATAATGGATT
          1 AAAGGTCCGATGACTCTGTGTCATCGTGAGTTATATGAATCCTATTACGAATT

                                                              
        440 AAAGGTCCGATGACTCTGTGTCATCGTGAGTTATATGAATCCTA-TACGA
          1 AAAGGTCCGATGACTCTGTGTCATCGTGAGTTATATGAATCCTATTACGA

        489 CCTAACACAC


Statistics
Matches: 92,  Mismatches: 9, Indels: 3
        0.88            0.09        0.03

Matches are distributed among these distances:
  52    2  0.02
  53   89  0.97
  54    1  0.01

ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34


Consensus pattern (53 bp):   
AAAGGTCCGATGACTCTGTGTCATCGTGAGTTATATGAATCCTATTACGAATT
Done.