genome.fa.s5752.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005752.1 Kokia drynarioides strain JFW-HI SEQ_120003, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56390

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--42	2	21.5	2	95	4	77	47	0	0	52	1.00
103--139	17	2.2	17	90	0	56	13	13	18	54	1.71
2270--2888	148	4.2	147	81	10	636	42	4	9	43	1.56
2283--2887	150	4.1	146	81	11	619	43	3	9	42	1.56
3437--3482	16	2.8	17	83	6	58	19	8	2	69	1.25
11697--11730	5	6.8	5	96	0	50	82	11	0	5	0.83
22050--22106	2	28.5	2	92	0	96	47	0	0	52	1.00
22469--22534	33	2.0	33	88	2	98	36	3	18	42	1.66
26175--26240	17	3.9	17	79	0	69	48	10	16	24	1.78
30340--30473	66	2.0	66	85	0	178	12	25	19	42	1.86
32587--32613	5	5.4	5	100	0	54	40	18	18	22	1.91
33304--33388	34	2.5	34	90	1	127	42	14	10	32	1.79
34004--34089	43	2.0	43	95	0	154	26	5	32	34	1.80
42129--42165	19	1.9	19	88	0	56	51	0	2	45	1.15
44227--44341	37	3.0	37	77	7	104	20	24	14	40	1.90
44236--44472	82	2.9	81	86	3	293	21	23	12	43	1.86
44196--44472	41	6.8	41	75	9	219	20	23	12	42	1.86
44364--44503	40	3.5	40	76	7	165	17	21	14	47	1.82
44264--44495	82	2.8	81	89	1	320	20	22	12	44	1.85
44969--45044	23	3.2	23	67	26	68	38	10	21	30	1.87
48962--49025	33	2.0	33	90	3	103	35	4	17	42	1.70
51733--51806	31	2.5	31	81	14	77	27	2	2	67	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54049--54107	29	2.0	29	83	3	73	32	6	11	49	1.66
54875--54918	14	3.1	14	81	18	56	36	2	0	61	1.09

Tables:   1

The End!