Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01005756.1 Kokia drynarioides strain JFW-HI SEQ_120010, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33403
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.35
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:779 original size:63 final size:63
Alignment explanation
Indices: 680--798 Score: 161
Period size: 63 Copynumber: 1.9 Consensus size: 63
670 TCTGGCACTG
* * *
680 TATGTAATACTCTTATACCGAGTTTATACGTATGAATCGGGTTTAGGGGTGTTACAGATACTA
1 TATGTAATACTCTTATACAGAGTTTATACGTATGAATCGAGTATAGGGGTGTTACAGATACTA
* *
743 TATGTAATACT-TCTATATCAG-GTTTATACGTGTGAATCGAGTATAGGGGTTTTACA
1 TATGTAATACTCT-TATA-CAGAGTTTATACGTATGAATCGAGTATAGGGGTGTTACA
799 TTTGGTGGTA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
62 1 0.02
63 46 0.94
64 2 0.04
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.38
Consensus pattern (63 bp):
TATGTAATACTCTTATACAGAGTTTATACGTATGAATCGAGTATAGGGGTGTTACAGATACTA
Found at i:5651 original size:63 final size:63
Alignment explanation
Indices: 5566--5687 Score: 165
Period size: 63 Copynumber: 1.9 Consensus size: 63
5556 TCTGGCACTG
* *
5566 TATGTAATACTCTTATAACGGGTTTATATGTATGAACCGGGTTTAAGGGTGTTACAGATACTA
1 TATGTAATACTCTTATAACGGGTTTATACGTATGAACCGGGTATAAGGGTGTTACAGATACTA
* * * * *
5629 TATGTAATACT-TCTATACCGGGTTTATACGTGTGAATCGGGTATAGGGGTGTTATAGAT
1 TATGTAATACTCT-TATAACGGGTTTATACGTATGAACCGGGTATAAGGGTGTTACAGAT
5688 TGATCCGATC
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
62 1 0.02
63 50 0.98
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.37
Consensus pattern (63 bp):
TATGTAATACTCTTATAACGGGTTTATACGTATGAACCGGGTATAAGGGTGTTACAGATACTA
Found at i:9379 original size:195 final size:195
Alignment explanation
Indices: 8965--9407 Score: 464
Period size: 195 Copynumber: 2.3 Consensus size: 195
8955 CCGACGCGAC
* * * *
8965 GGCTGAGGTACCACATATGTTGCGAGTACTCGACAGCTCGTGTGAGAAGCATCATGAGTTAGGAA
1 GGCTGAGGTACCACATATGTTGCGAGTCCTCGACAGCTCATGTGAGAAGCATCATGACTCAGGAA
* *
9030 ATGAGAAAAGAATCCGAGAATGGATTACAGGCCCTACGATGGCTGAGATTTATGCATAAGTGCAT
66 ATGAGAAAAGAATCCGAGAATGGATTACAGACCCTACGATGGCTGAGATCTATGCATAAGTGCAT
* * * * * * * **
9095 ATTCTCGATAACTCGTGTGAGCAGCATCGTTAGGGAATAGTTATATGCACAGATACTGTATTGAT
131 ACTCTCAACAACTCGTGTGAGCAACATCGTTAAGGAATAGTTATATACACAGACACTGTACCGAT
* * *
9160 GGCTGAGGTATCACTTATGTTGCGAGTCCTCGACAGCTCATGTGAGCAGCATCATGACTCAGGAA
1 GGCTGAGGTACCACATATGTTGCGAGTCCTCGACAGCTCATGTGAGAAGCATCATGACTCAGGAA
* * * * * * * * * *
9225 A-GAGATATGGATCCTA-AATTGATTATAGACCCTACGATGGTTGGGA-CTATGCTTTA-TGCAT
66 ATGAGAAAAGAATCCGAGAATGGATTACAGACCCTACGATGGCTGAGATCTATGCATAAGTGCAT
* * *
9286 ACTCTCAACAGCTCGTGTGAGCAACATTGTTAAGGAATAGTTTATAGTACAAACAGGCACTGTAC
131 ACTCTCAACAACTCGTGTGAGCAACATCGTTAAGGAATAG-TTATA-TAC--ACAGACACTGTAC
9351 CGAT
192 CGAT
* * * * * * *
9355 GG-TTAGGGTACCGCATACGTTGCGAGTCCTCAATAGCTCAAGTGAGTAGCATC
1 GGCTGA-GGTACCACATATGTTGCGAGTCCTCGACAGCTCATGTGAGAAGCATC
9408 GAGTACTGGT
Statistics
Matches: 203, Mismatches: 40, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
191 38 0.19
192 12 0.06
193 27 0.13
194 13 0.06
195 113 0.56
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (195 bp):
GGCTGAGGTACCACATATGTTGCGAGTCCTCGACAGCTCATGTGAGAAGCATCATGACTCAGGAA
ATGAGAAAAGAATCCGAGAATGGATTACAGACCCTACGATGGCTGAGATCTATGCATAAGTGCAT
ACTCTCAACAACTCGTGTGAGCAACATCGTTAAGGAATAGTTATATACACAGACACTGTACCGAT
Found at i:13468 original size:80 final size:79
Alignment explanation
Indices: 13323--13664 Score: 380
Period size: 80 Copynumber: 4.3 Consensus size: 79
13313 GACAATTATG
* * * * * * ** *
13323 GCACCCAGTGCCTAGTGAAATAACCGCGAATGTGAGCCCAACTTTAGTTGGATT-AACCAACAAA
1 GCACCCAGTGCTTAGCG-GATAAACGCAAATGTGAGCCCAACTCTAGTCAG-TTAAACCGACAAA
* *
13387 TATCTGTCAAACCTTA
64 TATCCGTCAAATCTTA
* * *
13403 ACACCCAGTGCTTACCGGATAAATCGCAAATGTGAGCCCAGCTCTAGTCAGTTAAACCGACAAAT
1 GCACCCAGTGCTTAGCGGATAAA-CGCAAATGTGAGCCCAACTCTAGTCAGTTAAACCGACAAAT
* * *
13468 ATCCATAAAATATTA
65 ATCCGTCAAATCTTA
* * * * *
13483 GCACCTAGTGCTTAGCGAATAAACCACAAATGTGAGCCCAGCTCTAGTTAGTTAAACCGACAAAT
1 GCACCCAGTGCTTAGCGGATAAA-CGCAAATGTGAGCCCAACTCTAGTCAGTTAAACCGACAAAT
13548 ATCCGTCAAATCTTA
65 ATCCGTCAAATCTTA
* *
13563 GCACCCAGTGCTTAGCGGATAAACTGCAAATGTGAGCCCAACTCTAGTCAGTTAAATCGATAAAT
1 GCACCCAGTGCTTAGCGGATAAAC-GCAAATGTGAGCCCAACTCTAGTCAGTTAAACCGACAAAT
* *
13628 ATCTGTCAAATCTTG
65 ATCCGTCAAATCTTA
* *
13643 GCACCCAGTGCCTAGTGGATAA
1 GCACCCAGTGCTTAGCGGATAA
13665 CCACAGTTGT
Statistics
Matches: 221, Mismatches: 38, Indels: 6
0.83 0.14 0.02
Matches are distributed among these distances:
79 7 0.03
80 214 0.97
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.24
Consensus pattern (79 bp):
GCACCCAGTGCTTAGCGGATAAACGCAAATGTGAGCCCAACTCTAGTCAGTTAAACCGACAAATA
TCCGTCAAATCTTA
Found at i:13615 original size:160 final size:159
Alignment explanation
Indices: 13323--13685 Score: 451
Period size: 160 Copynumber: 2.3 Consensus size: 159
13313 GACAATTATG
* * * * * *
13323 GCACCCAGTGCCTAGTGAAATAACCGCGAATGTGAGCCCAACTTTAGTTGGATTAACCAACAAAT
1 GCACCCAGTGCCTAGCG-AATAACCACAAATGTGAGCCCAGCTCTAGTTAGATTAACCAACAAAT
* *
13388 ATCTGTCAAACCTTAACACCCAGTGCTTACCGGATAAATCGCAAATGTGAGCCCAGCTCTAGTCA
65 ATCCGTCAAACCTTAACACCCAGTGCTTACCGGATAAATCGCAAATGTGAGCCCAACTCTAGTCA
13453 GTTAAACCGACAAATATCCATAAAATATTA
130 GTTAAACCGACAAATATCCATAAAATATTA
* * *
13483 GCACCTAGTGCTTAGCGAATAAACCACAAATGTGAGCCCAGCTCTAGTTAG-TTAAACCGACAAA
1 GCACCCAGTGCCTAGCGAAT-AACCACAAATGTGAGCCCAGCTCTAGTTAGATT-AACCAACAAA
* * *
13547 TATCCGTCAAATCTTAGCACCCAGTGCTTAGCGGATAAA-CTGCAAATGTGAGCCCAACTCTAGT
64 TATCCGTCAAACCTTAACACCCAGTGCTTACCGGATAAATC-GCAAATGTGAGCCCAACTCTAGT
* * ** * * *
13611 CAGTTAAATCGATAAATATCTGTCAAATCTTG
128 CAGTTAAACCGACAAATATCCATAAAATATTA
* * **
13643 GCACCCAGTGCCTAGTGGATAACCACAGTTGTGAGCCCAGCTC
1 GCACCCAGTGCCTAGCGAATAACCACAAATGTGAGCCCAGCTC
13686 GAGTGAATTA
Statistics
Matches: 173, Mismatches: 27, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
159 27 0.16
160 146 0.84
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.23
Consensus pattern (159 bp):
GCACCCAGTGCCTAGCGAATAACCACAAATGTGAGCCCAGCTCTAGTTAGATTAACCAACAAATA
TCCGTCAAACCTTAACACCCAGTGCTTACCGGATAAATCGCAAATGTGAGCCCAACTCTAGTCAG
TTAAACCGACAAATATCCATAAAATATTA
Found at i:19653 original size:63 final size:63
Alignment explanation
Indices: 19554--19681 Score: 256
Period size: 63 Copynumber: 2.0 Consensus size: 63
19544 ATGAAAAAGG
19554 ATCTGATGACTATGTGTCATCGTGAGAATATGAATCCTTTACGGATTATGAGGTCCGATGGCT
1 ATCTGATGACTATGTGTCATCGTGAGAATATGAATCCTTTACGGATTATGAGGTCCGATGGCT
19617 ATCTGATGACTATGTGTCATCGTGAGAATATGAATCCTTTACGGATTATGAGGTCCGATGGCT
1 ATCTGATGACTATGTGTCATCGTGAGAATATGAATCCTTTACGGATTATGAGGTCCGATGGCT
19680 AT
1 AT
19682 GTGTCATCGT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.34
Consensus pattern (63 bp):
ATCTGATGACTATGTGTCATCGTGAGAATATGAATCCTTTACGGATTATGAGGTCCGATGGCT
Found at i:19704 original size:52 final size:52
Alignment explanation
Indices: 19621--19755 Score: 189
Period size: 52 Copynumber: 2.6 Consensus size: 52
19611 ATGGCTATCT
* * *
19621 GATGACTATGTGTCATCGTGAGAATATGAATCCTTTACGGATTATGAGGTCC
1 GATGGCTATGTGTCATCGTGAGTATATGAATCATTTACGGATTATGAGGTCC
*
19673 GATGGCTATGTGTCATCGTGAGTATATGAATCATTTACGGATTATGAGGTTC
1 GATGGCTATGTGTCATCGTGAGTATATGAATCATTTACGGATTATGAGGTCC
* * * * *
19725 GGTGGTTACGTTTCATCATGAGTATATGAAT
1 GATGGCTATGTGTCATCGTGAGTATATGAAT
19756 GAAATGAAAT
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.36
Consensus pattern (52 bp):
GATGGCTATGTGTCATCGTGAGTATATGAATCATTTACGGATTATGAGGTCC
Found at i:21411 original size:20 final size:20
Alignment explanation
Indices: 21382--21425 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
21372 TGGTGCTGTT
21382 TTTTACTGTT-TTGATTGCTA
1 TTTTACTGTTATT-ATTGCTA
* *
21402 TTTTAGTGTTATTTTTGCTA
1 TTTTACTGTTATTATTGCTA
21422 TTTT
1 TTTT
21426 TTTGTTGTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.14, C:0.07, G:0.14, T:0.66
Consensus pattern (20 bp):
TTTTACTGTTATTATTGCTA
Found at i:21445 original size:26 final size:27
Alignment explanation
Indices: 21408--21458 Score: 79
Period size: 26 Copynumber: 1.9 Consensus size: 27
21398 GCTATTTTAG
21408 TGTTATTTTTGCTATTTTT-TTGTTGT
1 TGTTATTTTTGCTATTTTTGTTGTTGT
21434 TGTT-TTTGTTGCTATTTTTGTTGTT
1 TGTTATTT-TTGCTATTTTTGTTGTT
21459 TTTAATGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 3 0.13
26 15 0.65
27 5 0.22
ACGTcount: A:0.06, C:0.04, G:0.18, T:0.73
Consensus pattern (27 bp):
TGTTATTTTTGCTATTTTTGTTGTTGT
Found at i:21453 original size:12 final size:12
Alignment explanation
Indices: 21390--21514 Score: 84
Period size: 12 Copynumber: 10.8 Consensus size: 12
21380 TTTTTTACTG
*
21390 TTTTGATTGCTAT
1 TTTTG-TTGTTAT
*
21403 TTTAG-TGTTAT
1 TTTTGTTGTTAT
* *
21414 TTTTGCTATT-T
1 TTTTGTTGTTAT
*
21425 TTTTGTTGTTGT
1 TTTTGTTGTTAT
*
21437 TTTTGTTGCTAT
1 TTTTGTTGTTAT
21449 TTTTGTTGTT-T
1 TTTTGTTGTTAT
*
21460 TTAATGTTG----
1 TT-TTGTTGTTAT
21469 TTTTGTTGTTAT
1 TTTTGTTGTTAT
* **
21481 TTTTGCTACTAT
1 TTTTGTTGTTAT
*
21493 TTTAGTTGTTAT
1 TTTTGTTGTTAT
21505 TTTTGTTGTT
1 TTTTGTTGTT
21515 TAGATGTTAT
Statistics
Matches: 86, Mismatches: 19, Indels: 15
0.72 0.16 0.12
Matches are distributed among these distances:
8 5 0.06
9 2 0.02
11 21 0.24
12 54 0.63
13 4 0.05
ACGTcount: A:0.10, C:0.04, G:0.17, T:0.69
Consensus pattern (12 bp):
TTTTGTTGTTAT
Found at i:21459 original size:67 final size:68
Alignment explanation
Indices: 21363--21512 Score: 164
Period size: 67 Copynumber: 2.2 Consensus size: 68
21353 AAAATTTATA
* * * *
21363 TTGTTG-TTTTGGTGCTGTTTTTTACTGTTTTGATTGCTATTTTAG-TGTTATTTTTGCTA-TTT
1 TTGTTGTTTTTGTTGCTATTTTTTA-TGTTTTGAATGCTATTTT-GTTGTTATTTTTGCTACTAT
*
21425 TTTTG
64 TTTAG
* * *
21430 TTGTTGTTTTTGTTGCTATTTTTGT-TGTTTTTAATGTTGTTTTGTTGTTATTTTTGCTACTATT
1 TTGTTGTTTTTGTTGCTATTTTT-TATGTTTTGAATGCTATTTTGTTGTTATTTTTGCTACTATT
21494 TTAG
65 TTAG
*
21498 TTGTTATTTTTGTTG
1 TTGTTGTTTTTGTTG
21513 TTTAGATGTT
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
66 1 0.01
67 34 0.49
68 34 0.49
69 1 0.01
ACGTcount: A:0.09, C:0.05, G:0.19, T:0.67
Consensus pattern (68 bp):
TTGTTGTTTTTGTTGCTATTTTTTATGTTTTGAATGCTATTTTGTTGTTATTTTTGCTACTATTT
TAG
Found at i:21462 original size:56 final size:56
Alignment explanation
Indices: 21402--21528 Score: 125
Period size: 56 Copynumber: 2.3 Consensus size: 56
21392 TTGATTGCTA
* ** * *
21402 TTTTAGTGTTATTTTTGCTATT-TTTTTGTTGTTGTTTTTGTTGCTATTTTTGTTG
1 TTTTAGTGTTATTTTTGCTATTATTTTTGCTACTATTTTAGTTGCTATTTTTGTTG
* * * * *
21457 TTTTTAATGTT-GTTTTGTTGTTATTTTTGCTACTATTTTAGTTGTTATTTTTGTTG
1 -TTTTAGTGTTATTTTTGCTATTATTTTTGCTACTATTTTAGTTGCTATTTTTGTTG
21513 -TTTAGATGTTATTTTT
1 TTTTAG-TGTTATTTTT
21529 TATGCGTTTT
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
54 4 0.07
55 12 0.21
56 40 0.71
ACGTcount: A:0.11, C:0.03, G:0.17, T:0.69
Consensus pattern (56 bp):
TTTTAGTGTTATTTTTGCTATTATTTTTGCTACTATTTTAGTTGCTATTTTTGTTG
Found at i:21472 original size:21 final size:20
Alignment explanation
Indices: 21430--21478 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
21420 TATTTTTTTG
**
21430 TTGTTGTTTTTGTTGCTATTT
1 TTGTTGTTTTTAATGCTA-TT
* *
21451 TTGTTGTTTTTAATGTTGTT
1 TTGTTGTTTTTAATGCTATT
21471 TTGTTGTT
1 TTGTTGTT
21479 ATTTTTGCTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.06, C:0.02, G:0.20, T:0.71
Consensus pattern (20 bp):
TTGTTGTTTTTAATGCTATT
Found at i:21476 original size:44 final size:44
Alignment explanation
Indices: 21399--21528 Score: 129
Period size: 44 Copynumber: 2.9 Consensus size: 44
21389 GTTTTGATTG
* * * * *
21399 CTATTTTAG-TGTTATTTTTGCTATTTTTTTGTTGTTGTTTTTGTTG
1 CTATTTTAGTTGTTATTTATG---TTGTTTTGTTGTTATTTTTGCTA
*
21445 CTATTTTTGTTGTT-TTTAATGTTGTTTTGTTGTTATTTTTGCTA
1 CTATTTTAGTTGTTATTT-ATGTTGTTTTGTTGTTATTTTTGCTA
* * *
21489 CTATTTTAGTTGTTATTTTTGTTGTTTAGATGTTATTTTT
1 CTATTTTAGTTGTTATTTATGTTGTTTTGTTGTTATTTTT
21529 TATGCGTTTT
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
44 51 0.72
45 3 0.04
46 11 0.15
47 6 0.08
ACGTcount: A:0.12, C:0.04, G:0.16, T:0.68
Consensus pattern (44 bp):
CTATTTTAGTTGTTATTTATGTTGTTTTGTTGTTATTTTTGCTA
Found at i:23566 original size:148 final size:149
Alignment explanation
Indices: 23308--23585 Score: 366
Period size: 148 Copynumber: 1.9 Consensus size: 149
23298 TACTGAACTT
* * *
23308 TAGTCAAGTTTATCTTTGGAGCTTGTGGACTTTTGTTGTTGAACTACTTTAATAACTGATAATAA
1 TAGTCAAATTTATCTTTGGAGCTTGTGGAATTTTGTTGTTGAACTACGTT-ATAACTGATAATAA
* * * * *
23373 GCTGCATTTGTTAGTAATCCGAGAGATTATTGATGATTTATGAGAGATACA-TTTCTAGTTAATT
65 GCTACATTTGTTAATAATCCGAGAGATCATTGAAGATTTACGAGAGATACATTTTCTA-TTAATT
23437 TAGTTTAAGGATACCGGATTA
129 TAGTTTAAGGATACCGGATTA
* *
23458 TAGTCAAATTTA-CTATTGGAGCTTGTGGAATTTTGTTGTTTTAACTA-GTT-TAACTGATGATA
1 TAGTCAAATTTATCT-TTGGAGCTTGTGGAATTTTGTTG-TTGAACTACGTTATAACTGATAATA
* * * *
23520 GGCTACATTTTTTAATAATCTGAGAGATCATTGAAGATTTACGAGAGATATATTTTCTATTAATT
64 AGCTACATTTGTTAATAATCCGAGAGATCATTGAAGATTTACGAGAGATACATTTTCTATTAATT
23585 T
129 T
23586 TGGATTTTGA
Statistics
Matches: 111, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
148 61 0.55
149 8 0.07
150 35 0.32
151 7 0.06
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (149 bp):
TAGTCAAATTTATCTTTGGAGCTTGTGGAATTTTGTTGTTGAACTACGTTATAACTGATAATAAG
CTACATTTGTTAATAATCCGAGAGATCATTGAAGATTTACGAGAGATACATTTTCTATTAATTTA
GTTTAAGGATACCGGATTA
Found at i:33151 original size:11 final size:11
Alignment explanation
Indices: 33137--33177 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
33127 AAAATTGAAG
33137 GAAAAAAGAAA
1 GAAAAAAGAAA
33148 GAAAAAAG--A
1 GAAAAAAGAAA
*
33157 GAAAAAAAAAA
1 GAAAAAAGAAA
*
33168 GAAAGAAGAA
1 GAAAAAAGAA
33178 GAAGGGGAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
9 8 0.32
11 17 0.68
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (11 bp):
GAAAAAAGAAA
Found at i:33162 original size:20 final size:20
Alignment explanation
Indices: 33137--33176 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
33127 AAAATTGAAG
*
33137 GAAAAAAGAAAGAAAAAAGA
1 GAAAAAAAAAAGAAAAAAGA
*
33157 GAAAAAAAAAAGAAAGAAGA
1 GAAAAAAAAAAGAAAAAAGA
33177 AGAAGGGGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (20 bp):
GAAAAAAAAAAGAAAAAAGA
Done.