Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000576.1 Kokia drynarioides strain JFW-HI SEQ_111499, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5514
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32


Found at i:171 original size:22 final size:22

Alignment explanation


    Indices: 143--186  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        133 GATTTTTGTT

                                  
        143 AAAGATTACTTTGGAATTAAGG
          1 AAAGATTACTTTGGAATTAAGG

                                  
        165 AAAGATTACTTTGGAATTAAGG
          1 AAAGATTACTTTGGAATTAAGG

        187 GATGGATTGG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.41, C:0.05, G:0.23, T:0.32


Consensus pattern (22 bp):   
AAAGATTACTTTGGAATTAAGG
Done.