Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005764.1 Kokia drynarioides strain JFW-HI SEQ_120024, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 627

Length: 1045
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.38


Found at i:967 original size:6 final size:6

Alignment explanation


    Indices: 942--981  Score: 62
    Period size: 6  Copynumber: 6.3  Consensus size: 6

        932 ATCTTTTCAG

                                                          
        942 CCATCA TCCATCA CCCATCA CCATCA CCATCA CCATCA CC
          1 CCATCA -CCATCA -CCATCA CCATCA CCATCA CCATCA CC

        982 TTTTCCTTTT


Statistics
Matches: 32,  Mismatches: 1, Indels: 1
        0.94            0.03        0.03

Matches are distributed among these distances:
   6   20  0.62
   7   12  0.38

ACGTcount: A:0.30, C:0.53, G:0.00, T:0.17


Consensus pattern (6 bp):   
CCATCA

Done.