Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005765.1 Kokia drynarioides strain JFW-HI SEQ_120025, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 623

Length: 1039
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.38


Found at i:967 original size:6 final size:6

Alignment explanation


    Indices: 942--975  Score: 50
    Period size: 6  Copynumber: 5.3  Consensus size: 6

        932 ATCTTTTCAG

                                                   
        942 CCATCA TCCATCA CCCATCA CCATCA CCATCA CC
          1 CCATCA -CCATCA -CCATCA CCATCA CCATCA CC

        976 TTTTCCTTTT


Statistics
Matches: 26,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
   6   14  0.54
   7   12  0.46

ACGTcount: A:0.29, C:0.53, G:0.00, T:0.18


Consensus pattern (6 bp):   
CCATCA

Done.