Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01005775.1 Kokia drynarioides strain JFW-HI SEQ_120042, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11911
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Found at i:1804 original size:30 final size:29
Alignment explanation
Indices: 1764--2093 Score: 314
Period size: 29 Copynumber: 11.2 Consensus size: 29
1754 CCTTGGAGGT
1764 CCCC-AAACTTCCAAAAATCCCATTTTCGA
1 CCCCGAAACTTCCAAAAATCCCATTTT-GA
* * * *
1793 CCTCGAAACTTCAAAAAATCCTATTTTTA
1 CCCCGAAACTTCCAAAAATCCCATTTTGA
1822 CCCCCG-AAC-TCCAAAAAATCCCATTTTTGA
1 -CCCCGAAACTTCC-AAAAATCCCA-TTTTGA
* *
1852 CCCC-AAAGCTTCCAAAAATTCCATTTTTA
1 CCCCGAAA-CTTCCAAAAATCCCATTTTGA
* * *
1881 CCCCAAAACTTCCAAAAATTCCATTTTTA
1 CCCCGAAACTTCCAAAAATCCCATTTTGA
1910 CCCCG-AAC-TCCAAAAAATCCCATTTTCGA
1 CCCCGAAACTTCC-AAAAATCCCATTTT-GA
* * * *
1939 CCTCAAAACTTCCAAAAATTCCATTTTTA
1 CCCCGAAACTTCCAAAAATCCCATTTTGA
*
1968 CCCTCG-AACTTCTAAAAATCCCATTTTCGA
1 CCC-CGAAACTTCCAAAAATCCCATTTT-GA
* * *
1998 CCCCAAAACTTCCAAAAATCTCATTTTTA
1 CCCCGAAACTTCCAAAAATCCCATTTTGA
* *
2027 CCCCCAAACTCCCAAAAATCCCATTTTTGA
1 CCCCGAAACTTCCAAAAATCCCA-TTTTGA
* * *
2057 CCTCGAAACTTCCAAAAATTCCATTTTTA
1 CCCCGAAACTTCCAAAAATCCCATTTTGA
2086 CCCTCGAA
1 CCC-CGAA
2094 TGTCTAAAAA
Statistics
Matches: 248, Mismatches: 36, Indels: 33
0.78 0.11 0.10
Matches are distributed among these distances:
27 3 0.01
28 18 0.07
29 111 0.45
30 110 0.44
31 6 0.02
ACGTcount: A:0.35, C:0.33, G:0.04, T:0.28
Consensus pattern (29 bp):
CCCCGAAACTTCCAAAAATCCCATTTTGA
Found at i:1831 original size:29 final size:29
Alignment explanation
Indices: 1764--2088 Score: 294
Period size: 30 Copynumber: 11.1 Consensus size: 29
1754 CCTTGGAGGT
* *
1764 CCCCAAACTTCCAAAAATCCCATTTTCGAC
1 CCCCAAACTTCAAAAAATCCCATTTT-TAC
* * *
1794 CTCGAAACTTCAAAAAATCCTATTTTTAC
1 CCCCAAACTTCAAAAAATCCCATTTTTAC
* *
1823 CCCCGAACTCCAAAAAATCCCATTTTTGA-
1 CCCCAAACTTCAAAAAATCCCATTTTT-AC
* *
1852 CCCCAAAGCTTCCAAAAATTCCATTTTTAC
1 CCCCAAA-CTTCAAAAAATCCCATTTTTAC
* * *
1882 CCCAAAACTTCCAAAAATTCCATTTTTA-
1 CCCCAAACTTCAAAAAATCCCATTTTTAC
* * *
1910 CCCCGAACTCCAAAAAATCCCATTTTCGAC
1 CCCCAAACTTCAAAAAATCCCATTTT-TAC
* * * *
1940 CTCAAAACTTCCAAAAATTCCATTTTTAC
1 CCCCAAACTTCAAAAAATCCCATTTTTAC
* * * *
1969 CCTCGAACTTCTAAAAATCCCATTTTCGAC
1 CCCCAAACTTCAAAAAATCCCATTTT-TAC
* * *
1999 CCCAAAACTTCCAAAAATCTCATTTTTAC
1 CCCCAAACTTCAAAAAATCCCATTTTTAC
* *
2028 CCCCAAACTCCCAAAAATCCCATTTTTGAC
1 CCCCAAACTTCAAAAAATCCCATTTTT-AC
* * * *
2058 CTCGAAACTTCCAAAAATTCCATTTTTAC
1 CCCCAAACTTCAAAAAATCCCATTTTTAC
2087 CC
1 CC
2089 TCGAATGTCT
Statistics
Matches: 239, Mismatches: 49, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
28 21 0.09
29 104 0.44
30 114 0.48
ACGTcount: A:0.35, C:0.33, G:0.03, T:0.29
Consensus pattern (29 bp):
CCCCAAACTTCAAAAAATCCCATTTTTAC
Found at i:2103 original size:29 final size:29
Alignment explanation
Indices: 1769--2134 Score: 281
Period size: 29 Copynumber: 12.5 Consensus size: 29
1759 GAGGTCCCCA
* *
1769 AACTTCCAAAAATCCCATTTTCGA-CCTCG
1 AACTTCCAAAAATTCCATTTT-TACCCTCG
* *
1798 AAACTT-CAAAAAATCCTATTTTTACCCCCG
1 -AACTTCCAAAAATTCC-ATTTTTACCCTCG
* *
1828 AAC-TCCAAAAAATCCCATTTTTGACCC-CA
1 AACTTCC-AAAAATTCCATTTTT-ACCCTCG
*
1857 AAGCTTCCAAAAATTCCATTTTTACCC-CAA
1 AA-CTTCCAAAAATTCCATTTTTACCCTC-G
1887 AACTTCCAAAAATTCCATTTTTACCC-CG
1 AACTTCCAAAAATTCCATTTTTACCCTCG
* * *
1915 AAC-TCCAAAAAATCCCATTTTCGA-CCTCAA
1 AACTTCC-AAAAATTCCATTTT-TACCCTC-G
1945 AACTTCCAAAAATTCCATTTTTACCCTCG
1 AACTTCCAAAAATTCCATTTTTACCCTCG
* * * *
1974 AACTTCTAAAAATCCCATTTTCGACCC-CAA
1 AACTTCCAAAAATTCCATTTT-TACCCTC-G
* *
2004 AACTTCCAAAAA-TCTCATTTTTACCCCCA
1 AACTTCCAAAAATTC-CATTTTTACCCTCG
* *
2033 AACTCCCAAAAATCCCATTTTTGA-CCTCG
1 AACTTCCAAAAATTCCATTTTT-ACCCTCG
2062 AAACTTCCAAAAATTCCATTTTTACCCTCG
1 -AACTTCCAAAAATTCCATTTTTACCCTCG
* * *
2092 AA-TGTCTAAAAATGT-CATTTTTAACTTCG
1 AACT-TCCAAAAAT-TCCATTTTTACCCTCG
* *
2121 AATTTCCCAAAATT
1 AACTTCCAAAAATT
2135 ACTATTTCAC
Statistics
Matches: 278, Mismatches: 33, Indels: 52
0.77 0.09 0.14
Matches are distributed among these distances:
27 3 0.01
28 21 0.08
29 134 0.48
30 114 0.41
31 6 0.02
ACGTcount: A:0.35, C:0.31, G:0.04, T:0.30
Consensus pattern (29 bp):
AACTTCCAAAAATTCCATTTTTACCCTCG
Found at i:2104 original size:59 final size:59
Alignment explanation
Indices: 1764--2093 Score: 370
Period size: 59 Copynumber: 5.6 Consensus size: 59
1754 CCTTGGAGGT
* * *
1764 CCCC-AAACTTCCAAAAATCCCATTTTCGA-CCTCGAAACTTCAAAAAATCCTATTTTT-A
1 CCCCAAAACTTCCAAAAATTCCATTTT-TACCCTCG-AACTTCAAAAAATCCCATTTTTGA
** * * * *
1822 CCCCCGAAC-TCCAAAAAATCCCATTTTTGACCC-CAAAGCTTCCAAAAATTCCATTTTT-A
1 CCCCAAAACTTCC-AAAAATTCCATTTTT-ACCCTCGAA-CTTCAAAAAATCCCATTTTTGA
* *
1881 CCCCAAAACTTCCAAAAATTCCATTTTTACCC-CGAACTCCAAAAAATCCCATTTTCGA
1 CCCCAAAACTTCCAAAAATTCCATTTTTACCCTCGAACTTCAAAAAATCCCATTTTTGA
* * *
1939 CCTCAAAACTTCCAAAAATTCCATTTTTACCCTCGAACTTCTAAAAATCCCATTTTCGA
1 CCCCAAAACTTCCAAAAATTCCATTTTTACCCTCGAACTTCAAAAAATCCCATTTTTGA
* * * *
1998 CCCCAAAACTTCCAAAAA-TCTCATTTTTACCCCCAAACTCCCAAAAATCCCATTTTTGA
1 CCCCAAAACTTCCAAAAATTC-CATTTTTACCCTCGAACTTCAAAAAATCCCATTTTTGA
* *
2057 CCTCGAAACTTCCAAAAATTCCATTTTTACCCTCGAA
1 CCCCAAAACTTCCAAAAATTCCATTTTTACCCTCGAA
2094 TGTCTAAAAA
Statistics
Matches: 235, Mismatches: 27, Indels: 19
0.84 0.10 0.07
Matches are distributed among these distances:
57 16 0.07
58 50 0.21
59 162 0.69
60 7 0.03
ACGTcount: A:0.35, C:0.33, G:0.04, T:0.28
Consensus pattern (59 bp):
CCCCAAAACTTCCAAAAATTCCATTTTTACCCTCGAACTTCAAAAAATCCCATTTTTGA
Found at i:2131 original size:59 final size:58
Alignment explanation
Indices: 1769--2134 Score: 316
Period size: 59 Copynumber: 6.2 Consensus size: 58
1759 GAGGTCCCCA
* * * * *
1769 AACTTCCAAAAATCCCATTTTCGA-CCTCGAAACTTCAAAAAATCCTATTTTT-ACCCCCG
1 AACTTCCAAAAATTCCATTTT-TACCCTCG-AACTTCTAAAAATCCCATTTTTGA-CCTCG
* * * * * *
1828 AAC-TCCAAAAAATCCCATTTTTGACCC-CAAAGCTTCCAAAAATTCCATTTTT-ACCCCAA
1 AACTTCC-AAAAATTCCATTTTT-ACCCTCGAA-CTTCTAAAAATCCCATTTTTGACCTC-G
* * * *
1887 AACTTCCAAAAATTCCATTTTTACCC-CGAACTCCAAAAAATCCCATTTTCGACCTCAA
1 AACTTCCAAAAATTCCATTTTTACCCTCGAACTTCTAAAAATCCCATTTTTGACCTC-G
* * *
1945 AACTTCCAAAAATTCCATTTTTACCCTCGAACTTCTAAAAATCCCATTTTCGACCCCAA
1 AACTTCCAAAAATTCCATTTTTACCCTCGAACTTCTAAAAATCCCATTTTTGACCTC-G
* * * *
2004 AACTTCCAAAAA-TCTCATTTTTACCCCCAAACTCCCAAAAATCCCATTTTTGACCTCG
1 AACTTCCAAAAATTC-CATTTTTACCCTCGAACTTCTAAAAATCCCATTTTTGACCTCG
** * *
2062 AAACTTCCAAAAATTCCATTTTTACCCTCGAA-TGTCTAAAAATGTCATTTTTAACTTCG
1 -AACTTCCAAAAATTCCATTTTTACCCTCGAACT-TCTAAAAATCCCATTTTTGACCTCG
* *
2121 AATTTCCCAAAATT
1 AACTTCCAAAAATT
2135 ACTATTTCAC
Statistics
Matches: 262, Mismatches: 33, Indels: 25
0.82 0.10 0.08
Matches are distributed among these distances:
57 16 0.06
58 63 0.24
59 176 0.67
60 7 0.03
ACGTcount: A:0.35, C:0.31, G:0.04, T:0.30
Consensus pattern (58 bp):
AACTTCCAAAAATTCCATTTTTACCCTCGAACTTCTAAAAATCCCATTTTTGACCTCG
Found at i:3332 original size:29 final size:30
Alignment explanation
Indices: 3275--3407 Score: 164
Period size: 30 Copynumber: 4.5 Consensus size: 30
3265 GGAGGTCCCT
* **
3275 AAACTATCCAATAATTCCATTTTTGACCCCA
1 AAACT-TCCAAAAATTAAATTTTTGACCCCA
* *
3306 AAACTTTCAAAAATTATATTTTT-ACCCC-
1 AAACTTCCAAAAATTAAATTTTTGACCCCA
* * *
3334 TAACTTCCAAAAATTACATTTTTGACCTCA
1 AAACTTCCAAAAATTAAATTTTTGACCCCA
3364 AAACTTCCAAAAATTAAATTTTT-ACCCCA
1 AAACTTCCAAAAATTAAATTTTTGACCCCA
3393 AAACTTCCAAAAATT
1 AAACTTCCAAAAATT
3408 CCAATTTTAT
Statistics
Matches: 89, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
28 20 0.22
29 29 0.33
30 35 0.39
31 5 0.06
ACGTcount: A:0.41, C:0.24, G:0.02, T:0.34
Consensus pattern (30 bp):
AAACTTCCAAAAATTAAATTTTTGACCCCA
Found at i:3415 original size:29 final size:29
Alignment explanation
Indices: 3275--3563 Score: 205
Period size: 29 Copynumber: 9.8 Consensus size: 29
3265 GGAGGTCCCT
*
3275 AAACTATCCAATAATTCCATTTTTGACCCCA
1 AAACT-TCCAAAAATTCCATTTTT-ACCCCA
* **
3306 AAACTTTCAAAAATTATATTTTTACCCC-
1 AAACTTCCAAAAATTCCATTTTTACCCCA
* * *
3334 TAACTTCCAAAAATTACATTTTTGACCTCA
1 AAACTTCCAAAAATTCCATTTTT-ACCCCA
**
3364 AAACTTCCAAAAATTAAATTTTTACCCCA
1 AAACTTCCAAAAATTCCATTTTTACCCCA
* * *
3393 AAACTTCCAAAAATTCCAATTTTATCCTCG
1 AAACTTCCAAAAATTCCATTTTTA-CCCCA
* * *
3423 AACCTT-CAAAAATTCCATTTTTGACCTCG
1 AAACTTCCAAAAATTCCATTTTT-ACCCCA
* * *
3452 AAGCTTTCAAAAATTACCA-TTTTACCCCC
1 AAACTTCCAAAAATT-CCATTTTTACCCCA
* * * *
3481 GAA-TGTCCAAAAACTCCATTTTTGACCTCG
1 AAACT-TCCAAAAATTCCATTTTT-ACCCCA
*
3511 AAAC-TCTCAAAAATTACCA-TTTTACCCCT
1 AAACTTC-CAAAAATT-CCATTTTTACCCCA
* *
3540 GAA-TGTCCAAAAATTCTATTTTTA
1 AAACT-TCCAAAAATTCCATTTTTA
3564 TCTTGATTTT
Statistics
Matches: 210, Mismatches: 33, Indels: 32
0.76 0.12 0.12
Matches are distributed among these distances:
28 26 0.12
29 98 0.47
30 75 0.36
31 11 0.05
ACGTcount: A:0.36, C:0.26, G:0.04, T:0.34
Consensus pattern (29 bp):
AAACTTCCAAAAATTCCATTTTTACCCCA
Found at i:3442 original size:88 final size:86
Alignment explanation
Indices: 3275--3533 Score: 261
Period size: 88 Copynumber: 2.9 Consensus size: 86
3265 GGAGGTCCCT
* * * ** * *
3275 AAACTATCCAATAATTCCATTTTTGACCCCAAAACTTTCAAAAATTATATTTTTACCCCTAACTT
1 AAACT-TCCAAAAATTACATTTTT-ACCCCAAAACTTCCAAAAATTCCATTTTTACCTCGAACTT
*
3340 CCAAAAATTACATTTTTGACCTCA
64 -CAAAAATTCCATTTTTGACCTCA
* *
3364 AAACTTCCAAAAATTAAATTTTTACCCCAAAACTTCCAAAAATTCCAATTTTATCCTCGAACCTT
1 AAACTTCCAAAAATTACATTTTTACCCCAAAACTTCCAAAAATTCCATTTTTA-CCTCGAA-CTT
*
3429 CAAAAATTCCATTTTTGACCTCG
64 CAAAAATTCCATTTTTGACCTCA
* * ** *
3452 AAGCTTTCAAAAATTACCA-TTTTACCCCCGAA-TGTCCAAAAACTCCATTTTTGACCTCGAAAC
1 AAACTTCCAAAAATTA-CATTTTTACCCCAAAACT-TCCAAAAATTCCATTTTT-ACCTCG-AAC
3515 TCTCAAAAATTACCATTTT
62 T-TCAAAAATT-CCATTTT
3534 ACCCCTGAAT
Statistics
Matches: 144, Mismatches: 18, Indels: 15
0.81 0.10 0.08
Matches are distributed among these distances:
87 27 0.19
88 89 0.62
89 21 0.15
90 7 0.05
ACGTcount: A:0.37, C:0.26, G:0.04, T:0.34
Consensus pattern (86 bp):
AAACTTCCAAAAATTACATTTTTACCCCAAAACTTCCAAAAATTCCATTTTTACCTCGAACTTCA
AAAATTCCATTTTTGACCTCA
Found at i:3463 original size:59 final size:59
Alignment explanation
Indices: 3400--3562 Score: 193
Period size: 59 Copynumber: 2.8 Consensus size: 59
3390 CCAAAACTTC
* * * * * *
3400 CAAAAATT-CCAATTTTATCCTCGAACCTTCAAAAATTCCATTTTTGACCTCGAAGCTTT
1 CAAAAATTACC-ATTTTACCCCCGAACCTCCAAAAACTCCATTTTTGACCTCGAAACTCT
**
3459 CAAAAATTACCATTTTACCCCCGAATGTCCAAAAACTCCATTTTTGACCTCGAAACTCT
1 CAAAAATTACCATTTTACCCCCGAACCTCCAAAAACTCCATTTTTGACCTCGAAACTCT
* ** * *
3518 CAAAAATTACCATTTTACCCCTGAATGTCCAAAAATTCTATTTTT
1 CAAAAATTACCATTTTACCCCCGAACCTCCAAAAACTCCATTTTT
3563 ATCTTGATTT
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
59 90 0.98
60 2 0.02
ACGTcount: A:0.34, C:0.26, G:0.06, T:0.34
Consensus pattern (59 bp):
CAAAAATTACCATTTTACCCCCGAACCTCCAAAAACTCCATTTTTGACCTCGAAACTCT
Found at i:3563 original size:88 final size:87
Alignment explanation
Indices: 3281--3563 Score: 204
Period size: 88 Copynumber: 3.2 Consensus size: 87
3271 CCCTAAACTA
* * * * ** * **
3281 TCCAATAATTCCATTTTTGACCCCAAAACTTTCAAAAATTATATTTTTA-CC-CCTAACTTCCAA
1 TCCAAAAATTCAATTTTT-ACCCCAAAACTTCCAAAAACTCCAATTTTATCCTCGAAACTT-CAA
* * * *
3344 AAATTACATTTTTGACCTCAAAAC
64 AAATTCCATTTTTGACCCCGAAGC
* * *
3368 TTCCAAAAATTAAATTTTTACCCCAAAACTTCCAAAAATTCCAATTTTATCCTCGAACCTTCAAA
1 -TCCAAAAATTCAATTTTTACCCCAAAACTTCCAAAAACTCCAATTTTATCCTCGAAACTTCAAA
*
3433 AATTCCATTTTTGACCTCGAAGC
65 AATTCCATTTTTGACCCCGAAGC
* * ** *
3456 TTTCAAAAATTACCA-TTTTACCCCCGAA-TGTCCAAAAACTCCATTTTTGA-CCTCGAAACTCT
1 -TCCAAAAATT-CAATTTTTACCCCAAAACT-TCCAAAAACTCCAATTTT-ATCCTCGAAACT-T
3518 CAAAAATTACCA-TTTT-ACCCCTGAATG-
61 CAAAAATT-CCATTTTTGACCCC-GAA-GC
*
3545 TCCAAAAATTCTATTTTTA
1 TCCAAAAATTCAATTTTTA
3564 TCTTGATTTT
Statistics
Matches: 161, Mismatches: 24, Indels: 20
0.79 0.12 0.10
Matches are distributed among these distances:
87 29 0.18
88 105 0.65
89 23 0.14
90 4 0.02
ACGTcount: A:0.36, C:0.26, G:0.04, T:0.34
Consensus pattern (87 bp):
TCCAAAAATTCAATTTTTACCCCAAAACTTCCAAAAACTCCAATTTTATCCTCGAAACTTCAAAA
ATTCCATTTTTGACCCCGAAGC
Found at i:3603 original size:58 final size:56
Alignment explanation
Indices: 3429--3617 Score: 184
Period size: 59 Copynumber: 3.2 Consensus size: 56
3419 CTCGAACCTT
3429 CAAAAATTCCATTTTTGACCTCGAAGCTTTC-AAAAATTACCATTTTACCCCCGAATGTC
1 CAAAAATT-CATTTTTGACCTCGAA--TTTCTAAAAATTACCATTTTA-CCCCGAATGTC
* **
3488 CAAAAACTCCATTTTTGACCTCGAAACTCTCAAAAATTACCATTTTACCCCTGAATGTC
1 CAAAAA-TTCATTTTTGACCTCGAATTTCT-AAAAATTACCATTTTACCCC-GAATGTC
* * * * *
3547 CAAAAATTCTATTTTT-ATCTTGATTTTTCTAAAAATTACCGTTTTACCCTCAAATGTC
1 CAAAAATTC-ATTTTTGACCTCGA-ATTTCTAAAAATTACCATTTTACCC-CGAATGTC
* *
3605 TAAAATTTCATTT
1 CAAAAATTCATTT
3618 CAAACCCCAA
Statistics
Matches: 110, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
57 6 0.05
58 42 0.38
59 61 0.55
60 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.06, T:0.37
Consensus pattern (56 bp):
CAAAAATTCATTTTTGACCTCGAATTTCTAAAAATTACCATTTTACCCCGAATGTC
Found at i:9194 original size:19 final size:18
Alignment explanation
Indices: 9170--9233 Score: 53
Period size: 19 Copynumber: 3.4 Consensus size: 18
9160 ATTAAATAGG
9170 ATTTAAATGAATATTTTTA
1 ATTTAAAT-AATATTTTTA
*
9189 ATTTAATTCAA-ATATTTTA
1 ATTTAAAT-AATAT-TTTTA
9208 TATATT-AATAATATTTTT-
1 -AT-TTAAATAATATTTTTA
9226 ATTTAAAT
1 ATTTAAAT
9234 TTAATTATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
16 2 0.05
17 5 0.14
18 2 0.05
19 20 0.54
20 6 0.16
21 2 0.05
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (18 bp):
ATTTAAATAATATTTTTA
Found at i:9238 original size:19 final size:17
Alignment explanation
Indices: 9179--9231 Score: 54
Period size: 20 Copynumber: 2.9 Consensus size: 17
9169 GATTTAAATG
9179 AATATTTTTAATTTAATT
1 AATATTTTT-ATTTAATT
9197 CAAATATTTTATATATTAA-T
1 --AATATTTT-TAT-TTAATT
9217 AATATTTTTATTTAA
1 AATATTTTTATTTAA
9232 ATTTAATTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
16 4 0.13
17 3 0.10
18 8 0.26
20 11 0.35
21 5 0.16
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (17 bp):
AATATTTTTATTTAATT
Found at i:11812 original size:19 final size:19
Alignment explanation
Indices: 11788--11845 Score: 55
Period size: 21 Copynumber: 2.9 Consensus size: 19
11778 AGGATTTAAA
11788 CAAATATTTTAATTTAATT
1 CAAATATTTTAATTTAATT
*
11807 CAAATAATTTATAAATTAATT
1 CAAAT-ATTT-TAATTTAATT
*
11828 -ATTAATATTTTTATTTAA
1 CA--AATATTTTAATTTAA
11846 ATTTAATTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
19 5 0.16
20 11 0.34
21 13 0.41
22 3 0.09
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (19 bp):
CAAATATTTTAATTTAATT
Done.