Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000579.1 Kokia drynarioides strain JFW-HI SEQ_111504, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1949
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37


Found at i:982 original size:23 final size:23

Alignment explanation


    Indices: 922--991  Score: 95
    Period size: 23  Copynumber: 3.0  Consensus size: 23

        912 TCATTAACAT

                              *     
        922 TGTTCGTGAACATGTTCAATTATA
          1 TGTTCGTGAACATGTTCATTTA-A

             *   *                 
        946 TATTCATGAACATGTTCATTTAA
          1 TGTTCGTGAACATGTTCATTTAA

                             *     
        969 TGTTCGTGAACATGTTCGTTTAA
          1 TGTTCGTGAACATGTTCATTTAA

        992 ATTAAATGAA


Statistics
Matches: 40,  Mismatches: 6, Indels: 1
        0.85            0.13        0.02

Matches are distributed among these distances:
  23   21  0.52
  24   19  0.47

ACGTcount: A:0.29, C:0.13, G:0.16, T:0.43


Consensus pattern (23 bp):   
TGTTCGTGAACATGTTCATTTAA

Found at i:1018 original size:23 final size:23

Alignment explanation


    Indices: 975--1020  Score: 58
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        965 TTAATGTTCG

                          *        
        975 TGAACATGTTCGTTTAAATTAAA
          1 TGAACATGTTCGTTGAAATTAAA

                *                   
        998 TGAATATGTTCG-TGAACATTAAA
          1 TGAACATGTTCGTTGAA-ATTAAA

       1021 CAAACGAACA


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  22    3  0.15
  23   17  0.85

ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37


Consensus pattern (23 bp):   
TGAACATGTTCGTTGAAATTAAA
Done.