Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005791.1 Kokia drynarioides strain JFW-HI SEQ_120064, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4022
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32


Found at i:2340 original size:10 final size:10

Alignment explanation


    Indices: 2315--2348  Score: 50
    Period size: 10  Copynumber: 3.2  Consensus size: 10

       2305 TGTTTGATAA

                       
       2315 AAAATAAAAAT
          1 AAAA-AAAAAT

                       
       2326 GAAAAAAAAAT
          1 -AAAAAAAAAT

                      
       2337 AAAAAAAAAT
          1 AAAAAAAAAT

              
       2347 AA
          1 AA

       2349 GTATATTTAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  10   12  0.55
  11    6  0.27
  12    4  0.18

ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12


Consensus pattern (10 bp):   
AAAAAAAAAT
Done.