genome.fa.s5801.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005801.1 Kokia drynarioides strain JFW-HI SEQ_120075, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142643

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2617--2714	30	3.3	30	79	2	108	44	5	17	32	1.70
4828--4920	48	1.9	48	88	0	141	26	22	12	37	1.91
4839--5005	85	2.0	85	80	4	194	28	22	13	36	1.91
4717--5544	208	4.0	208	85	2	1025	24	20	16	38	1.93
5046--5212	85	2.0	85	84	4	221	24	22	16	36	1.94
5475--5595	48	2.5	48	83	2	136	22	23	17	37	1.94
14190--15883	847	2.0	851	91	1	2725	35	16	17	30	1.92
22417--22444	3	9.3	3	100	0	56	35	0	0	64	0.94
22866--23108	123	1.9	128	86	8	347	45	3	10	40	1.54
22967--23346	151	2.5	151	82	5	451	41	3	10	44	1.56
23343--23389	24	2.0	23	83	4	58	48	2	6	42	1.40
26229--26310	34	2.4	34	86	8	105	34	28	15	21	1.95
35561--35605	21	2.1	21	84	8	56	24	4	20	51	1.66
36417--36451	16	2.2	16	90	10	54	51	5	17	25	1.67
37426--37556	51	2.6	51	82	4	158	20	15	25	38	1.92
38928--38966	16	2.4	16	86	4	51	64	0	10	25	1.25
40125--40173	9	5.1	9	79	13	53	73	2	2	22	1.04
40109--40181	30	2.4	31	84	11	89	72	4	4	19	1.17
43813--43860	17	2.8	17	80	0	60	50	12	18	18	1.78
43811--43868	17	3.4	17	72	9	55	48	10	24	17	1.78
46030--46269	51	4.6	51	86	5	288	34	16	22	26	1.95
47026--47065	21	2.0	21	90	5	64	37	10	15	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56588--56621	6	5.5	6	89	6	50	11	0	2	85	0.71
56588--56621	13	2.7	13	90	4	52	11	0	2	85	0.71
73465--73531	31	2.2	30	81	7	73	29	8	7	53	1.59
74757--74985	51	4.5	51	86	3	300	32	13	23	30	1.94
76593--76633	3	14.0	3	89	5	66	0	29	0	70	0.87
76590--76640	20	2.5	20	87	0	75	1	29	0	68	1.00
76950--77002	21	2.5	21	70	14	54	35	13	5	45	1.67
77816--77867	19	2.5	20	81	12	61	57	19	5	17	1.59
78494--78538	23	2.0	23	86	0	63	35	20	13	31	1.91
80041--80270	24	9.7	24	80	3	214	26	17	16	40	1.90
80042--80270	48	4.8	47	82	2	242	26	17	15	40	1.90
80042--80270	96	2.4	95	85	1	289	26	17	15	40	1.90
80211--80253	12	3.6	12	80	0	59	18	11	20	48	1.79
82506--82579	35	2.1	36	87	7	107	21	4	0	74	0.98
82505--82585	10	8.4	9	72	20	58	20	3	0	75	0.96
82504--82586	21	4.3	20	73	23	72	21	3	0	74	0.97
82526--82579	19	3.1	17	87	12	83	25	1	0	72	0.95
99249--99307	30	2.0	30	89	0	91	27	1	6	64	1.28
102697--102725	14	2.0	15	93	6	51	62	0	13	24	1.32
102891--102933	22	2.0	22	81	9	52	34	0	13	51	1.42
105026--105445	196	2.1	196	80	8	458	34	19	19	26	1.96
108761--108853	7	12.7	7	70	20	66	19	2	1	77	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108762--108853	20	4.6	20	74	15	73	19	2	1	77	0.94
108765--108859	39	2.4	39	76	5	91	20	3	1	75	0.99
108789--108865	16	4.7	16	72	18	61	22	1	2	74	1.02
108789--108841	17	3.1	18	77	20	60	24	0	0	75	0.80
108759--108843	16	5.6	16	79	10	65	21	2	0	76	0.90
108961--108995	10	3.4	10	88	7	52	11	14	8	65	1.46
111762--111815	22	2.5	22	96	0	99	29	29	24	16	1.97
111762--111822	22	2.8	22	92	0	86	32	27	24	14	1.95
112622--112696	37	2.0	37	97	0	141	10	50	1	37	1.46
117348--117380	12	2.8	12	95	0	57	75	0	9	15	1.03
119633--119715	43	1.9	43	85	0	112	22	21	19	36	1.95
119633--119729	43	2.3	43	81	3	106	23	18	19	38	1.93
119784--119897	43	2.7	43	85	0	147	28	16	17	36	1.92
120831--120876	22	2.0	23	83	8	58	45	8	6	39	1.61
122062--122111	25	2.1	23	81	7	55	32	4	4	60	1.34
130273--130340	34	2.0	35	88	8	104	58	2	1	36	1.22
130340--130460	60	2.0	59	87	4	172	47	0	2	49	1.14
138583--138780	30	6.8	28	71	17	136	29	29	7	33	1.84
138544--138747	30	6.9	30	74	13	174	33	27	4	34	1.78
138544--138810	58	4.6	58	81	7	265	31	29	5	33	1.81
140954--141151	30	6.8	28	71	17	136	29	29	7	33	1.84
140915--141118	30	6.9	30	74	13	174	33	27	4	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140915--141181	58	4.6	58	81	7	265	31	29	5	33	1.81
142332--142455	60	2.1	60	98	0	239	17	25	28	29	1.98

Tables:   1

The End!