Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005810.1 Kokia drynarioides strain JFW-HI SEQ_120092, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6050
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32


Found at i:2229 original size:31 final size:31

Alignment explanation


    Indices: 2194--2254  Score: 88
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       2184 TAACTTTTTA

                      *                     
       2194 ATCAATTTTAGTTTTTGTATCTTTT-GAATTG
          1 ATCAATTTTAATTTTTGTAT-TTTTCGAATTG

                            *             
       2225 ATCAATTTTAATTTTTTTATTTTTCGAATT
          1 ATCAATTTTAATTTTTGTATTTTTCGAATT

       2255 TTAAAATTTT


Statistics
Matches: 27,  Mismatches: 2, Indels: 2
        0.87            0.06        0.06

Matches are distributed among these distances:
  30    4  0.15
  31   23  0.85

ACGTcount: A:0.25, C:0.07, G:0.08, T:0.61


Consensus pattern (31 bp):   
ATCAATTTTAATTTTTGTATTTTTCGAATTG
Done.