Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01000582.1 Kokia drynarioides strain JFW-HI SEQ_111511, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2913
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.28
Found at i:372 original size:200 final size:198
Alignment explanation
Indices: 28--624 Score: 609
Period size: 198 Copynumber: 3.0 Consensus size: 198
18 TTCCTGAACA
* * * * ** *
28 AATGTTTAGAAAATTGC-TCGAAGGGATGGATCATCTTGAATACTGTAAGGAATTGATGTTATAG
1 AATGTTTAGAAAATTGCAT-GACGGAATGGATCGTCTT-AATACTTTAAGGAACAGATGTTATAA
* * * * * *
92 AAGAACTCGTAAATGTTTGACAAGTTTGGCAGTTCATCCCAGAACAAA-GAGAGAAACAATTCTG
64 AAGAACTCGTAAA-GTTTGACAAGGTCGGAAGTTCGTCCAAGAACAAATGA-AG-AACAATTCTC
156 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATGGACCAA
126 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATGGACCAA
*
221 ATTATGTG
191 ATGATGTG
* *
229 AATGTTTTGAAAATTGCATGACGGAATGGATCGTCTTAAAACTTTAAGGAACAGATGTTATAAAA
1 AATGTTTAGAAAATTGCATGACGGAATGGATCGTCTTAATACTTTAAGGAACAGATGTTATAAAA
* * *
294 GAAATCGTGAAAGTTTGACAAGGTCGGGAAGTTCGGCCAAGAACAAATGATGAACAATTCTCACG
66 GAACTCGT-AAAGTTTGACAAGGTC-GGAAGTTCGTCCAAGAACAAATGAAGAACAATTCTCACG
* * * *
359 TAAATAAGTTTTTATTTCAAAGACCAAAGGTTTTTTACAAAATGACAAACTATATGG-CTCAAAA
129 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATGGAC-CAAAT
423 GATGTG
193 GATGTG
** ** * * * ** * * * *
429 -AT-TTCCCGAGCATGGAATGTTC-GAA-AAATTG-CTCGAATACTTTAAGGAACCGAAGTTATA
1 AATGTT-TAGAAAATTGCATG-ACGGAATGGATCGTCT-TAATACTTTAAGGAACAGATGTTATA
* * * *
489 AAAGAACTCGTAATAGTTTGACAAGTTCGGAAGTTCGTCCATGAACCAATTGACA-AAAAATTCT
63 AAAGAACTCGTAA-AGTTTGACAAGGTCGGAAGTTCGTCCAAGAA-CAAATGA-AGAACAATTCT
* * * *
553 CACGTAAATAAGTTTTTAACTCAAAGACCAAAAGTTGTTTACAAAATGAGAAACAATTTGGACCA
125 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATGGACCA
618 AATGATG
190 AATGATG
625 CGATTTACCA
Statistics
Matches: 332, Mismatches: 52, Indels: 27
0.81 0.13 0.07
Matches are distributed among these distances:
197 19 0.06
198 126 0.38
199 15 0.05
200 117 0.35
201 52 0.16
202 3 0.01
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.28
Consensus pattern (198 bp):
AATGTTTAGAAAATTGCATGACGGAATGGATCGTCTTAATACTTTAAGGAACAGATGTTATAAAA
GAACTCGTAAAGTTTGACAAGGTCGGAAGTTCGTCCAAGAACAAATGAAGAACAATTCTCACGTA
AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATGGACCAAATGAT
GTG
Found at i:1079 original size:216 final size:216
Alignment explanation
Indices: 463--2101 Score: 1658
Period size: 216 Copynumber: 7.7 Consensus size: 216
453 AAAATTGCTC
* *
463 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAATAGTTTGACAAGTTCGGAAGTTCGTC
1 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTC
* * * * *
528 CATGAACCAATTGACAAAAAATTCTCACGTAAATAAGTTTTTAACTCAAAGACCAAAAGTTGTTT
66 CAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * *
593 ACAAAATGAGAAACAATTTGGACCAAATGATGCGATTTACCAAGCATGGAATGTTCAAAAAATTT
131 ACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAGAAATTG
**
658 CTTTAAGGAATGGATCATCTT
196 CTCGAAGGAATGGATCATCTT
*
679 GAATACTTTAAGGAACCGAAGTTATATAAGAACTCGTAAAAGTTTAGTTTGACAAGTTC-GAAAG
1 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT-AAA----AGTTTGACAAGTTCAG-AAG
* * * *
743 TTCATCCAAGAACCAAGAGAGAAACAAATCTCACGTAAATAAG-TTTTAATTCAAAGCCCAAAAG
60 TTCGTCCAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * *
807 TTGGTTACAACATGATAAACTATTTTGACCAAATGATACGATTTCCTGAGCATGGAATGTTCGAG
125 TTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAG
* * *
872 AAATTGCTGGAAGGAATGGATCGTCTA
190 AAATTGCTCGAAGGAATGGATCATCTT
* * * * *
899 GAATACTTTAATGAACCGAACTTATAAAAGAGC-CTGTAAAAGTTTTACAAGTTCAGAAGTTCGG
1 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTC-GTAAAAGTTTGACAAGTTCAGAAGTTCGT
* * * * * * *
963 CCAATAACAAATAAACAAACAATTGTGACGTAAATAAGTTTTCAATTCAAAGACCAAAAGTTGTT
65 CCAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
** * *
1028 TACAAAACCACAAACTATTTGGACCAAATGATACGATTCCCCGAGCATGGAATGTTC-AGAAAAT
130 TACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAG-AAAT
*
1092 TGCTCGAAGGAATGGATCGTCTT
194 TGCTCGAAGGAATGGATCATCTT
* * * * * **
1115 GAATACTTTAAGAAACCAAAGTAATAAAAGAACTCGTAAAAGTTTTACAAGTTCGGGTGTTCGTC
1 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTC
* * * *
1180 CAAGAACCAAAAAAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAACAGTTGTAT
66 CAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * * *
1245 GCAAAATTAAAAACTACTTGAACCAACTGAT--G---T-----G-ATTG--T-TTAGA-AAATTG
131 ACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAGAAATTG
* *
1295 CTTGACGGAATGGATCATCTT
196 CTCGAAGGAATGGATCATCTT
* * * * *
1316 GAAAACTTTAAGGAACTGAAGTTATAAAATAACTTGTAAAAGTTTAACAAGTTC-GAAAGTTCAG
1 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTC-G
* * ** * * *
1380 -CCAAGAACCAATAAACAAATGATTCTCACGTAAATAAG-TTTTAAATCAAAGACCAAAAGCTAT
64 TCCAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * * * * * * *
1443 TTACTATATGCCAAACTATTTGGACCGAATGATGCGATTTCCCAAGCACGAAATGTTTG-GAAAA
129 TTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAG-AAA
* * * *
1507 TTTCTTGAAGGAATGGATTATATT
193 TTGCTCGAAGGAATGGATCATCTT
* * * * *
1531 GAATAATTTATGGAACC-ATAGTTATCAAAGAACTCGTAAATGTTTGACAAGTTCAAAAGTTCGT
1 GAATACTTTAAGGAACCGA-AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGT
* * *
1595 CCAAGAACCAACAGAGAAACAATTCTCAGGTGAATAAG-TTTTAATTCAAAGACCAAAAGTTGTT
65 CCAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
1659 TACAAAATGACAAACTATTTTGGACCAAAT--T---A--T-----G--T-GAATGTTCTGA-AAA
130 TACAAAATGACAAACTA-TTTGGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAGAAA
* * *
1708 TTACTCGATA-AAATGGATCGTCTT
193 TTGCTCGA-AGGAATGGATCATCTT
* * * * * *
1732 GAATGCTTTAAGGGACCGATGTCATAGAAGAACTCGTAAAAGTTTGACAAGTTCAGAAATT-GTG
1 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGT-
** * * * *
1796 CCAAGAACCAAGGGAGAAACAATTCTCACGTAAATAACTTTTTAAATCGAAGACCAAAAGTTTTT
65 CCAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * * *
1861 TACAAAACGACTAACTATTTGGACAAAATGATGCGATTTCTCGAGCATGGAATGTTCGGGAAATT
130 TACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAGAAATT
* *
1926 ACTCGAAGGAATGGATCGTCTT
195 GCTCGAAGGAATGGATCATCTT
* **
1948 GAATACTTTAAGGAACCAAAGTTATTTAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTC
1 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTC
* * *
2013 CAAGAACCAAGAGAGAAATAATTCTCACGT-AATAAGTTTTAAATTCAAAGACCAAAAGATT-TT
66 CAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTT
2076 TACAAAATGACAAACTATTTGGACCA
130 TACAAAATGACAAACTATTTGGACCA
2102 GATTATGCTA
Statistics
Matches: 1167, Mismatches: 197, Indels: 119
0.79 0.13 0.08
Matches are distributed among these distances:
200 46 0.04
201 225 0.19
202 45 0.04
203 3 0.00
204 1 0.00
205 4 0.00
206 2 0.00
208 1 0.00
209 1 0.00
210 1 0.00
211 2 0.00
213 2 0.00
214 7 0.01
215 243 0.21
216 395 0.34
217 5 0.00
219 4 0.00
220 127 0.11
221 53 0.05
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.27
Consensus pattern (216 bp):
GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTC
CAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
ACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAGAAATTG
CTCGAAGGAATGGATCATCTT
Found at i:1583 original size:632 final size:633
Alignment explanation
Indices: 29--2913 Score: 2485
Period size: 632 Copynumber: 4.6 Consensus size: 633
19 TCCTGAACAA
* * * * ** * *
29 ATGTTTAGAAAATTGCTCGAAGGGATGGATCATCTTGAATACTGTAAGGAATTGATGTTATAGAA
1 ATGTTCAGAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATATAA
* * * ** * * * * *
94 GAACTCGTAAATGTTTGACAAGTTTGGCAGTTCA-TCCCAGAACAAAGAGAGAAACAATTCTGAC
66 GAACTCGTAAAAGTTTAACAAGTTCGAAAGTTCAGTCCAAGAACCAAGAGAGAAATAAATCTCAC
* * *
158 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATGGACC--A-
131 GTAAATAAG-TTTTAAATCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTGGACCGAAT
* * * * *
220 -A----A-TT--ATG--TG-AATGTTTTGAAAATTGCAT-GACGGAATGGATCGTCTT-AAAACT
195 GATGCGATTTCCAAGCATGAAATG-TTCGAAAATTGC-TGGAAGGAATGGATCATCTTGAATACT
* * * * * * *
272 TTAAGGAACAGATGTTATAAAAGAAATCGTGAAAGTTTGACAAGGTCGGGAAGTTCGGCCAAGAA
258 TTAAGGAACCGAAGTTATCAAAGAACTCGTAAAAGTTTGACAAGTTC-AGAAGTTCGGCCAAGAA
** * * * *
337 -CAA-ATGATGAACAATTCTCACGTAAATAAGTTTTTATTTCAAAGACCAAAGGTTTTTTACAAA
322 CCAACA-GACAAACAATTCTCACGTAAATAAGTTTTCAATTCAAAGACCAAAAGTTGTTTACAAA
* * *
400 ATGACAAACTATATGG-CTCAAAAGATGTGATTTCCCGAGCATGGAATGTTC-G---A-------
386 ATGACAAACTATTTGGAC-CAAATGAT-CGA-TTCCCGAGCAT-GAATGTTCAGAAAATTGCTCG
* *
453 AA--AAT---T-G-CTCGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAATAGTTTGAC
447 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* * * * *
511 AAGTTCGGAAGTTCGTCCATGAACCAATTGACAAAAAATTCTCACGTAAATAAGTTTTTAACTCA
512 AAGTTCAGAAGTTCGTCCAAGAACCAATAGACAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * *
576 AAGACCAAAAGTTGTTTACAAAATGAGAAACAATTTGGACCAAATGATGCGATTTACCAAGCAT
577 AAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTGAACCAAATGAT-CG--TT--C--GCAT
* * *
640 GGAATGTTCAAAAAATTTCTTTAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATA
1 ---ATGTTCAGAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATA
*
705 TAAGAACTCGTAAAAGTTTAGTTTGACAAGTTCGAAAGTTCA-TCCAAGAACCAAGAGAGAAACA
63 TAAGAACTCGTAAAAGTTTA-----ACAAGTTCGAAAGTTCAGTCCAAGAACCAAGAGAGAAATA
* * ** * * *
769 AATCTCACGTAAATAAGTTTTAATTCAAAGCCCAAAAGTTGGTTACAACATGATAAACTATTTTG
123 AATCTCACGTAAATAAGTTTTAAATCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTGG
* * * * * *
834 ACCAAATGATACGATTTCCTGAGCATGGAATGTTCGAGAAATTGCTGGAAGGAATGGATCGTCTA
188 ACCGAATGATGCGATTTCC-AAGCATGAAATGTTCGA-AAATTGCTGGAAGGAATGGATCATCTT
* * * * *
899 GAATACTTTAATGAACCGAACTTATAAAAGAGC-CTGTAAAAGTTTTACAAGTTCAGAAGTTCGG
251 GAATACTTTAAGGAACCGAAGTTATCAAAGAACTC-GTAAAAGTTTGACAAGTTCAGAAGTTCGG
* * * * * *
963 CCAATAACAAATAAACAAACAATTGTGACGTAAATAAGTTTTCAATTCAAAGACCAAAAGTTGTT
315 CCAAGAACCAACAGACAAACAATTCTCACGTAAATAAGTTTTCAATTCAAAGACCAAAAGTTGTT
**
1028 TACAAAACCACAAACTATTTGGACCAAATGATACGATTCCCCGAGCATGGAATGTTCAGAAAATT
380 TACAAAATGACAAACTATTTGGACCAAATGAT-CGATT-CCCGAGCAT-GAATGTTCAGAAAATT
* * *
1093 GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGAAACCAAAGTAATAAAAGAACTCGTAAAAGT
442 GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGT
* * ** * * *
1158 TTTACAAGTTCGGGTGTTCGTCCAAGAACCAAAAAAGAAACAATTCTCACGTAAATAAGTTTTTA
507 TTGACAAGTTCAGAAGTTCGTCCAAGAACCAATAGACAAACAATTCTCACGTAAATAAGTTTTTA
* * * * * *
1223 ATTCAAAGACCAACAGTTGTATGCAAAATTAAAAACTACTTGAACCAACTGAT-G-T-G-AT
572 ATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTGAACCAAATGATCGTTCGCAT
* * * * *
1281 -TGTTTAGAAAATTGCTTGACGGAATGGATCATCTTGAAAACTTTAAGGAACTGAAGTTATAAAA
1 ATGTTCAGAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATATAA
* * * * * * *
1345 TAACTTGTAAAAGTTTAACAAGTTCGAAAGTTCAG-CCAAGAACCAATAAACAAATGATTCTCAC
66 GAACTCGTAAAAGTTTAACAAGTTCGAAAGTTCAGTCCAAGAACCAAGAGAGAAATAAATCTCAC
* * * *
1409 GTAAATAAGTTTTAAATCAAAGACCAAAAGCTATTTACTATATGCCAAACTATTTGGACCGAATG
131 GTAAATAAGTTTTAAATCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTGGACCGAATG
* * * * * * *
1474 ATGCGATTTCCCAAGCACGAAATGTTTGGAAAATTTCTTGAAGGAATGGATTATATTGAATAATT
196 ATGCGATTT-CCAAGCATGAAATG-TTCGAAAATTGCTGGAAGGAATGGATCATCTTGAATACTT
* * * *
1539 TATGGAACC-ATAGTTATCAAAGAACTCGTAAATGTTTGACAAGTTCAAAAGTTCGTCCAAGAAC
259 TAAGGAACCGA-AGTTATCAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCAAGAAC
* * *
1603 CAACAGAGAAACAATTCTCAGGTGAATAAGTTTT-AATTCAAAGACCAAAAGTTGTTTACAAAAT
323 CAACAGACAAACAATTCTCACGTAAATAAGTTTTCAATTCAAAGACCAAAAGTTGTTTACAAAAT
* * *
1667 GACAAACTATTTTGGACCAAAT--T--A-T-----G--TGAATGTTCTGAAAATTACTCGATA-A
388 GACAAACTA-TTTGGACCAAATGATCGATTCCCGAGCATGAATGTTCAGAAAATTGCTCGA-AGG
* * * * *
1719 AATGGATCGTCTTGAATGCTTTAAGGGACCGATGTCATAGAAGAACTCGTAAAAGTTTGACAAGT
451 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* ** * * * *
1784 TCAGAAATT-GTGCCAAGAACCAAGGGAGAAACAATTCTCACGTAAATAACTTTTTAAATCGAAG
516 TCAGAAGTTCGT-CCAAGAACCAATAGACAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * ** * *
1848 ACCAAAAGTTTTTTACAAAACGACTAACTATTTGGACAAAATGATGCGATTTCTCGAGCAT
580 ACCAAAAGTTGTTTACAAAATGAAAAACTATTTGAACCAAATGAT-CG---T-TC--GCAT
* * * * * * *
1909 GGAATGTTCGGGAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATT
1 ---ATGTTCAGAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATA
* *
1974 TAAGAACTCGTAAAAGTTTGACAAGTTC-AGAAGTTC-GTCCAAGAACCAAGAGAGAAATAATTC
63 TAAGAACTCGTAAAAGTTTAACAAGTTCGA-AAGTTCAGTCCAAGAACCAAGAGAGAAATAAATC
2037 TCACGT-AATAAGTTTTAAATTCAAAGACCAAAAGATT-TTTACAAAATGACAAACTATTTGGAC
127 TCACGTAAATAAGTTTTAAA-TCAAAGACCAAAAG-TTATTTACAAAATGACAAACTATTTGGAC
* * * * *
2100 C-----A---GA-TT--ATGC-T--AATATTCTAAAAATTGCAT-GAAGGAATGGATCGTCTTAA
190 CGAATGATGCGATTTCCAAGCATGAAATGTTC-GAAAATTGC-TGGAAGGAATGGATCATCTTGA
* * * * * *
2150 ATACTTTAAGAAACCGATGTTAT-AAAGGAAATCGTAAAAGTTTAACAAGTTCTGAAGCTCGGCC
253 ATACTTTAAGGAACCGAAGTTATCAAA-GAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCC
* * * ** * * * *
2214 GAGAACCAATAGACAAATAAACCTCACATAAATAAG-TTTCTAAATCAAAGACCAAAATTTTTTT
317 AAGAACCAACAGACAAACAATTCTCACGTAAATAAGTTTTC-AATTCAAAGACCAAAAGTTGTTT
** * *
2278 ACAAAATGACAAACTATTTGGATGAAAAGATGCGATTTCCCGAGCATAGAATGTTCGAAAAAATT
381 ACAAAATGACAAACTATTTGGACCAAATGAT-CGA-TTCCCGAGCAT-GAATGTTC-AGAAAATT
* * * *
2343 GCTCGAAGGAATGGATCGTCATG-ATACTTTAAGGTATCGAAGTTATAAAAGAACTTGTAAAAGT
442 GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGT
* *
2407 TTGACAAGTTCAGAAGTTCATCCAAGAACCAATAGACAAACAATTCTCACATAAATAAGTTTTTA
507 TTGACAAGTTCAGAAGTTCGTCCAAGAACCAATAGACAAACAATTCTCACGTAAATAAGTTTTTA
* * * *
2472 ATTGAAAGACCAAAAGTTGTTTACAAATATCATAAACTATTT-AGACCAGATGATGCGTTTCCCC
572 ATTCAAAGACCAAAAGTTGTTTACAAA-ATGAAAAACTATTTGA-ACCAAATGAT-CG-TT---C
2536 GAACAT
630 G--CAT
**
2542 GGAATGTTTGGAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTAT-
1 ---ATGTTCAGAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATA
* * * * * * * * * *
2606 TCCAGAATTCGTACAAGTTTGACAAGTTTGGAAGTT-TGTCCAAAAATCGAGAGAG-AATCAAAT
63 T-AAGAACTCGTAAAAGTTTAACAAGTTCGAAAGTTCAGTCCAAGAACCAAGAGAGAAAT-AAAT
* * *
2669 CTCATGTAAATAACTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTGGA-
126 CTCACGTAAATAA-GTTTTAAATCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTGGAC
* * * *
2733 CGAAAAGATGCGATTACCTGAA-CATTAAATGTTCGAAAATAGCTGGAAGGAATGGATCATCTTG
190 CG-AATGATGCGATTTCC--AAGCATGAAATGTTCGAAAATTGCTGGAAGGAATGGATCATCTTG
* * * * *
2797 AATACTTTAAGGAACCGAAGTTATCAAATAACTTGTAAATGTTTGACAAGTTCGGAAGTTCGTCC
252 AATACTTTAAGGAACCGAAGTTATCAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCC
* * * *
2862 AAGAACCAACAGAGAAACAATTCTCAGGTGAATAAGTTTTTAATTCAAAGAC
317 AAGAACCAACAGACAAACAATTCTCACGTAAATAAGTTTTCAATTCAAAGAC
Statistics
Matches: 1830, Mismatches: 310, Indels: 228
0.77 0.13 0.10
Matches are distributed among these distances:
614 69 0.04
616 10 0.01
617 270 0.15
618 85 0.05
619 51 0.03
620 5 0.00
622 2 0.00
623 2 0.00
624 4 0.00
626 2 0.00
627 5 0.00
628 2 0.00
629 1 0.00
630 3 0.00
631 57 0.03
632 505 0.28
633 216 0.12
634 176 0.10
635 9 0.00
637 71 0.04
638 1 0.00
639 1 0.00
641 2 0.00
642 3 0.00
643 1 0.00
645 2 0.00
646 1 0.00
647 7 0.00
648 112 0.06
649 12 0.01
650 2 0.00
651 1 0.00
652 140 0.08
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.28
Consensus pattern (633 bp):
ATGTTCAGAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATATAA
GAACTCGTAAAAGTTTAACAAGTTCGAAAGTTCAGTCCAAGAACCAAGAGAGAAATAAATCTCAC
GTAAATAAGTTTTAAATCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTGGACCGAATG
ATGCGATTTCCAAGCATGAAATGTTCGAAAATTGCTGGAAGGAATGGATCATCTTGAATACTTTA
AGGAACCGAAGTTATCAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGGCCAAGAACCAA
CAGACAAACAATTCTCACGTAAATAAGTTTTCAATTCAAAGACCAAAAGTTGTTTACAAAATGAC
AAACTATTTGGACCAAATGATCGATTCCCGAGCATGAATGTTCAGAAAATTGCTCGAAGGAATGG
ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGA
AGTTCGTCCAAGAACCAATAGACAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
AGTTGTTTACAAAATGAAAAACTATTTGAACCAAATGATCGTTCGCAT
Found at i:1675 original size:215 final size:214
Alignment explanation
Indices: 1281--2913 Score: 1126
Period size: 215 Copynumber: 7.7 Consensus size: 214
1271 CTGATGTGAT
* * * * * *
1281 TGTTTAGAAAATTGCTTGACGGAATGGATCATCTTGAAAACTTTAAGGAACTGAAGTTATAAAAT
1 TGTTTGGAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATCAAAG
* * * * * **
1346 AACTTGTAAAAGTTTAACAAGTTC-GAAAGTTCAG-CCAAGAACCAATAAACAAATGATTCTCAC
66 AACTCGTAAAAGTTTGACAAGTTCAG-AAGTTC-GTCCAAGAACCAAGAGAGAAACAATTCTCAC
* * * * *
1409 GTAAATAAGTTTTAAATCAAAGACCAAAAGCTATTTACTATATGCCAAACTATTTGGACCGAATG
129 GTAAATAAGTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTGGACC-AATG
*
1474 ATGCGATTTCCCAAGCACGAAA
193 ATGCGATTTCCCAAGCATGAAA
* * * * *
1496 TGTTTGGAAAATTTCTTGAAGGAATGGATTATATTGAATAATTTATGGAACC-ATAGTTATCAAA
1 TGTTTGGAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGA-AGTTATCAAA
* * * *
1560 GAACTCGTAAATGTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAACAGAGAAACAATTCTCAGG
65 GAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* *
1625 TGAATAAGTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTTGGACC-A--A
130 TAAATAAGTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTA-TTTGGACCAATGA
*
1687 ----A-TT---ATG--TG-AA
194 TGCGATTTCCCAAGCATGAAA
* * * * * * * *
1697 TGTTCT-GAAAATTACTCGATA-AAATGGATCGTCTTGAATGCTTTAAGGGACCGATGTCAT-AG
1 TGTT-TGGAAAATTGCTTGA-AGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATCA-
* *
1759 AAGAACTCGTAAAAGTTTGACAAGTTCAGAAATT-GTGCCAAGAACCAAGGGAGAAACAATTCTC
63 AAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGT-CCAAGAACCAAGAGAGAAACAATTCTC
* * * * * * *
1823 ACGTAAATAACTTTTTAAATCGAAGACCAAAAGTTTTTTACAAAACGACTAACTATTTGGACAAA
127 ACGTAAATAA-GTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTGGAC-CA
* * *
1888 ATGATGCGATTTCTCGAGCATGGAA
190 ATGATGCGATTTCCCAAGCATGAAA
* * * * * * **
1913 TGTTCGGGAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTTAAG
1 TGTTTGGAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATCAAAG
*
1978 AACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGT
66 AACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
*
2043 -AATAAGTTTTAAATTCAAAGACCAAAAGATT-TTTACAAAATGACAAACTATTTGGACCAGATT
131 AAATAAGTTTT-AATTCAAAGACCAAAAG-TTATTTACAAAATGACAAACTATTTGGACCA-ATG
* **
2106 ATGCTAATATTCTAAAAATTGCATG-AA
193 ATGC-GAT-TTC--CCAA--GCATGAAA
* ** * *
2133 GGAATGG---ATCGTCTT--A--AAT--A-C-T-TTAAGAA-ACCGATGTTATA--AA-GGAA--
1 TGTTTGGAAAATTG-CTTGAAGGAATGGATCATCTT--GAATA-C--T-TTA-AGGAACCGAAGT
* * * * * ** * * * *
2180 -ATCGTAA-AAGT-TTAACAAGTTCTG--AAGCTCGGCCG--AGAACCAATAGA-C-A-A-ATAA
58 TATC-AAAGAACTCGTAA-AAGTT-TGACAAGTTCAGAAGTTCG-TCCAAGA-ACCAAGAGAGAA
* * ** ** * * * *
2234 AC--CTCACA-TAAATA-AGTTTCTAAATCAAAGACCAAAATTTTTTTACAAAATGACAAACTAT
118 ACAATTCTCACGTAA-ATAAGTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTAT
** * *
2295 TTGGATGAAAAGATGCGATTTCCCGAGCAT-AGAA
182 TTGGA-CCAATGATGCGATTTCCCAAGCATGA-AA
* * * * * * * *
2329 TGTTCGAAAAAATTGCTCGAAGGAATGGATCGTCATG-ATACTTTAAGGTATCGAAGTTATAAAA
1 TGTTTG-GAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATCAAA
* * * * *
2393 GAACTTGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAATAGACAAACAATTCTCACA
65 GAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* * * * *
2458 TAAATAAGTTTTTAATTGAAAGACCAAAAGTTGTTTACAAATATCATAAACTATTTAGACCAGAT
130 TAAATAAG-TTTTAATTCAAAGACCAAAAGTTATTTACAAA-ATGACAAACTATTTGGACCA-AT
*
2523 GATGCG-TTTCCCCGAA-CATGGAA
192 GATGCGATTT-CCC-AAGCATGAAA
*
2546 TGTTTGGAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATTC-CA
1 TGTTTGGAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-TCAAA
* * ** * * * * * * *
2610 GAATTCGTACAAGTTTGACAAGTTTGGAAGTTTGTCCAAAAATCGAGAGAGAATCAAATCTCATG
65 GAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* * *
2675 TAAATAACTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTGGACGAAAAG
130 TAAATAA-GTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTGGAC-CAATG
* * *
2740 ATGCGATTACCTGAA-CATTAAA
193 ATGCGATTTCC-CAAGCATGAAA
* * * *
2762 TG-TTCGAAAATAGCTGGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATCAAAT
1 TGTTTGGAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATCAAAG
* * * * *
2826 AACTTGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAACAGAGAAACAATTCTCAGGT
66 AACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
*
2891 GAATAAGTTTTTAATTCAAAGAC
131 AAATAAG-TTTTAATTCAAAGAC
Statistics
Matches: 1095, Mismatches: 218, Indels: 210
0.72 0.14 0.14
Matches are distributed among these distances:
195 4 0.00
196 4 0.00
197 1 0.00
199 5 0.00
200 10 0.01
201 162 0.15
202 55 0.05
203 7 0.01
204 9 0.01
205 5 0.00
206 9 0.01
207 19 0.02
208 24 0.02
209 19 0.02
210 10 0.01
211 6 0.01
212 9 0.01
213 4 0.00
214 21 0.02
215 330 0.30
216 216 0.20
217 151 0.14
218 4 0.00
219 1 0.00
220 5 0.00
221 5 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (214 bp):
TGTTTGGAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATCAAAG
AACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
AAATAAGTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTGGACCAATGATG
CGATTTCCCAAGCATGAAA
Found at i:1709 original size:416 final size:416
Alignment explanation
Indices: 237--2913 Score: 2481
Period size: 416 Copynumber: 6.4 Consensus size: 416
227 TGAATGTTTT
* * *
237 GAAAATTGCAT-GACGGAATGGATCGTCTT-AAAACTTTAAGGAA-CAGATGTTATAAAAGAAAT
1 GAAAATTGC-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA-A-GTTATAAAAGAACT
* * * *
299 CGTGAAAGTTTGACAAGGTCGGGAAGTTCGGCCAAGAA-CAA-ATGATG-AACAATTCTCACGTA
63 CGTAAAAGTTTGACAAGTTC-AGAAGTTCGTCCAAGAACCAACA-GA-GAAACAATTCTCACGTA
* * * * **
361 AATAAGTTTTTATTTCAAAGACCAAAGGTTTTTTACAAAATGACAAACTATATGG-CTCAAAAGA
125 AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGAC-CAAATTA
* ** * ** *** ** * *
425 TG-TG-AT-TTCCCGAGCATGGAATGTTCGAA-AAATTG-CTCGAATACTTTAAGGAACCGAAGT
189 TGATGAATGTT-CTGAAAATTGCTTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
* * * * * * * *
485 TATAAAAGAACTCGTAATAGTTTGACAAGTTCGGAAGTTCGTCCATGAACCAATTGACAAAAAAT
253 TATAAAAGAACTTGTAAAAGTTTAACAAGTTCGAAAGTTCGGCCAAGAACCAATAGACAAATAAT
* * * *
550 TCTCACGTAAATAAGTTTTTAACTCAAAGACCAAAAGTTGTTTACAAAATGAGAAACAATTTGGA
318 TCTCACGTAAATAAG-TTTTAAATCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTGGA
* * * * *
615 CCAAATGATGCGATTTACCAAGCATGGAATGTTCA
382 CCGAATGATGCGATTTCCCGAGCATGAAATGTTCG
* * ** * *
650 AAAAATTTCTTTAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATATAAGAACTCG
1 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC-AAGTTATAAAAGAACTCG
* * *
715 TAAAAGTTTAGTTTGACAAGTTC-GAAAGTTCATCCAAGAACCAAGAGAGAAACAAATCTCACGT
65 T-AAA----AGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAACAGAGAAACAATTCTCACGT
* * * * *
779 AAATAAG-TTTTAATTCAAAGCCCAAAAGTTGGTTACAACATGATAAACTATTTTGACCAAATGA
124 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAAT--
* *
843 TACGATTTCCTGAGCATGGAATGTTC-GAGAAATTGCTGGAAGGAATGGATCGTCTAGAATACTT
187 T---A-----T--G-AT-GAATGTTCTGA-AAATTGCTTGAAGGAATGGATCGTCTTGAATACTT
* * * * * *
907 TAATGAACCGAACTTATAAAAGAGCCTGTAAAAGTTTTACAAGTTC-AGAAGTTCGGCCAATAAC
239 TAAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTAACAAGTTCGA-AAGTTCGGCCAAGAAC
* * * * * * * *
971 AAATAAACAAACAATTGTGACGTAAATAAGTTTTCAATTCAAAGACCAAAAGTTGTTTACAAAAC
303 CAATAGACAAATAATTCTCACGTAAATAAGTTTT-AAATCAAAGACCAAAAGTTATTTACAAAAT
* * * * * *
1036 CACAAACTATTTGGACCAAATGATACGATTCCCCGAGCATGGAATGTTCA
367 GACAAACTATTTGGACCGAATGATGCGATTTCCCGAGCATGAAATGTTCG
* *
1086 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGAAACCAAAGTAATAAAAGAACTCG
1 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC-AAGTTATAAAAGAACTCG
* * ** * *
1151 TAAAAGTTTTACAAGTTCGGGTGTTCGTCCAAGAACCAAAAAAGAAACAATTCTCACGTAAATAA
65 TAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAACAGAGAAACAATTCTCACGTAAATAA
* * * * * * * * *
1216 GTTTTTAATTCAAAGACCAACAGTTGTATGCAAAATTAAAAACTACTTGAACCAACTGATG-TGA
130 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATTATGATGA
* * * * *
1280 TTGTT-TAGAAAATTGCTTGACGGAATGGATCATCTTGAAAACTTTAAGGAACTGAAGTTATAAA
195 ATGTTCT-GAAAATTGCTTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA
* * * *
1344 ATAACTTGTAAAAGTTTAACAAGTTCGAAAGTTCAGCCAAGAACCAATAAACAAATGATTCTCAC
259 AGAACTTGTAAAAGTTTAACAAGTTCGAAAGTTCGGCCAAGAACCAATAGACAAATAATTCTCAC
* * * *
1409 GTAAATAAGTTTTAAATCAAAGACCAAAAGCTATTTACTATATGCCAAACTATTTGGACCGAATG
324 GTAAATAAGTTTTAAATCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTGGACCGAATG
* * *
1474 ATGCGATTTCCCAAGCACGAAATGTTTG
389 ATGCGATTTCCCGAGCATGAAATGTTCG
* * ** * * * *
1502 GAAAATTTCTTGAAGGAATGGATTATATTGAATAATTTATGGAACCATAGTTATCAAAGAACTCG
1 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA-AGTTATAAAAGAACTCG
* * * *
1567 TAAATGTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAACAGAGAAACAATTCTCAGGTGAATAA
65 TAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAACAGAGAAACAATTCTCACGTAAATAA
1632 G-TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTTGGACCAAATTATG-TG
130 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA-TTTGGACCAAATTATGATG
* * * * * * * *
1695 AATGTTCTGAAAATTACTCGATA-AAATGGATCGTCTTGAATGCTTTAAGGGACCGATGTCATAG
194 AATGTTCTGAAAATTGCTTGA-AGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
* * ** * *
1759 AAGAACTCGTAAAAGTTTGACAAGTTCAGAAA-TT-GTGCCAAGAACCAAGGGAGAAACAATTCT
258 AAGAACTTGTAAAAGTTTAACAAGTTC-GAAAGTTCG-GCCAAGAACCAATAGACAAATAATTCT
* * * * * **
1822 CACGTAAATAACTTTTTAAATCGAAGACCAAAAGTTTTTTACAAAACGACTAACTATTTGGACAA
321 CACGTAAATAA-GTTTTAAATCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTGGACCG
* *
1887 AATGATGCGATTTCTCGAGCATGGAATGTTCG
385 AATGATGCGATTTCCCGAGCATGAAATGTTCG
* * **
1919 GGAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTTAAGAACTCG
1 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC-AAGTTATAAAAGAACTCG
* *
1984 TAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGT-AATAA
65 TAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAACAGAGAAACAATTCTCACGTAAATAA
* * *
2048 GTTTTAAATTCAAAGACCAAAAGATT-TTTACAAAATGACAAACTATTTGGACCAGATTATGCT-
130 GTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAAACTATTTGGACCAAATTATGATG
* * * * * *
2111 AATATTCTAAAAATTGCATGAAGGAATGGATCGTCTTAAATACTTTAAGAAACCGATGTTATAAA
194 AATGTTCTGAAAATTGCTTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA
* * * * * **
2176 GGAAATCGTAAAAGTTTAACAAGTTCTG-AAGCTCGGCCGAGAACCAATAGACAAATAAACCTCA
259 AGAACTTGTAAAAGTTTAACAAGTTC-GAAAGTTCGGCCAAGAACCAATAGACAAATAATTCTCA
* * * *
2240 CATAAATAAGTTTCTAAATCAAAGACCAAAATTTTTTTACAAAATGACAAACTATTTGGA-TGAA
323 CGTAAATAAGTTT-TAAATCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTGGACCG-A
*
2304 AAGATGCGATTTCCCGAGCAT-AGAATGTTCG
386 ATGATGCGATTTCCCGAGCATGA-AATGTTCG
* * * * *
2335 AAAAAATTGCTCGAAGGAATGGATCGTCATG-ATACTTTAAGGTATCGAAGTTATAAAAGAACTT
1 -GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG-AACCAAGTTATAAAAGAACTC
* * * *
2399 GTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAATAGACAAACAATTCTCACATAAATA
64 GTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAACAGAGAAACAATTCTCACGTAAATA
* * * *
2464 AGTTTTTAATTGAAAGACCAAAAGTTGTTTACAAATATCATAAACTATTTAGACCAGATGATGCG
129 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA-ATGACAAACTATTTGGACCA-A--AT---
* *
2529 TTTCCCCGAACATGGAATGTT-TGGAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTAAG
187 TAT----G---AT-GAATGTTCT-GAAAATTGCTTGAAGGAATGGATCGTCTTGAATACTTTAAG
*** * * * * * * * * * *
2593 GAACCGAAGTTATTCCAGAA-TTCGTACAAGTTTGACAAGTTTGGAAGTTTGTCCAAAAATCGAG
243 GAACCGAAGTTATAAAAGAACTT-GTAAAAGTTTAACAAGTTCGAAAGTTCGGCCAAGAACCAAT
* * * * *
2657 AGA-GAATCAAATCTCATGTAAATAACTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGAC
307 AGACAAAT-AATTCTCACGTAAATAA-GTTTTAAATCAAAGACCAAAAGTTATTTACAAAATGAC
* * * * *
2721 AAACTATTTGGA-CGAAAAGATGCGATTACCTGAACATTAAATGTTC-
370 AAACTATTTGGACCG-AATGATGCGATTTCCCGAGCATGAAATGTTCG
* * * * * *
2767 GAAAATAGCTGGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATCAAATAACTTG
1 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC-AAGTTATAAAAGAACTCG
* * * *
2832 TAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAACAGAGAAACAATTCTCAGGTGAATAA
65 TAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAACAGAGAAACAATTCTCACGTAAATAA
2897 GTTTTTAATTCAAAGAC
130 GTTTTTAATTCAAAGAC
Statistics
Matches: 1855, Mismatches: 323, Indels: 153
0.80 0.14 0.07
Matches are distributed among these distances:
412 1 0.00
413 22 0.01
414 28 0.02
415 49 0.03
416 573 0.31
417 403 0.22
418 81 0.04
419 39 0.02
420 2 0.00
421 2 0.00
422 1 0.00
423 1 0.00
424 2 0.00
427 1 0.00
428 2 0.00
430 1 0.00
431 81 0.04
432 151 0.08
433 175 0.09
434 14 0.01
435 12 0.01
436 214 0.12
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (416 bp):
GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAGTTATAAAAGAACTCGT
AAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAACAGAGAAACAATTCTCACGTAAATAAG
TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATTATGATGAA
TGTTCTGAAAATTGCTTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
AACTTGTAAAAGTTTAACAAGTTCGAAAGTTCGGCCAAGAACCAATAGACAAATAATTCTCACGT
AAATAAGTTTTAAATCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTGGACCGAATGAT
GCGATTTCCCGAGCATGAAATGTTCG
Found at i:1879 original size:833 final size:839
Alignment explanation
Indices: 28--2913 Score: 2618
Period size: 833 Copynumber: 3.4 Consensus size: 839
18 TTCCTGAACA
* * ** * ** * * *
28 AATGTTTAGAAAATTGCTCGAAGGGATGGATCATCTTGAATACTGTAAGGAATTGATGTTATAGA
1 AATGTTTGGAAAATTACTCGAAGAAATGGATCATCTTGAATACTTTAAGGAACCGAAGTCATACA
* ** * * * * * *
93 AGAACTCGTAAATGTTTGACAAGTTTGGCAGTTCAT-CCCAGAACAAAGAGAGAAACAATTCTGA
66 AGAACTCGTAAAAGTTTGACAAGTTCAGAAGTT-GTGCCAAAAACCAAGAGAGAAACAATTCTCA
* * * * *
157 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATGGACCAAA
130 CGTAAATAACTTTTTAATTCAAAGACCAAAAGTTATTTACAAAACGACAAACTATTTGGACAAAA
* * * *
222 TTAT--G--T----GA--AT-G--T-TTTGAAAATTGCAT-GACGGAATGGATCGTCTT-AAAAC
195 TGATGCGATTACCCGAGCATGGAATGTTCGAAAATTGC-TCGAAGGAATGGATCGTCTTGAATAC
* * * * *
271 TTTAAGGAA-CAGATGTTATAAAAGAAATCGTGAAAGTTTGACAAGGTCGGGAAGTTCGGCCAAG
259 TTTAAGGAACCA-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GGAAGTTCGTCCAAG
* * * * *
335 AA-CAAATGATG-AACAATTCTCACGTAAATAAGTTTTTATTTCAAAGACCAAAGGTTTTTTACA
322 AACCAAAAGA-GAAACAATTCTCACGT-AATAAGTTTTTAATTCAAAGACCAAAAGATTTATACA
* * * * * ** ** * * *** **
398 AAATGACAAACTA-TATG-GCTCAAAAGATG-TGAT-TTCCCGAGCATGGAATGTTCGAA-AAAT
385 AAATGAAAAACTACT-TGAAC-CAGATGATGCTAATATT-CTAAAAATTGCATGAAGGAATGGAT
** * * * * *
458 --TGCTCGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAATAGTTTGACAAGTTCGGAA
447 CAT-CTTAAATACTTTAAGAAACCGAAGTTATAAAAGAAATCGTAAAAGTTTAACAAGTTCTGAA
* * ** * * * *
521 GTTC-GTCCATGAACCAATTGACAAA-AAATTCTCACGTAAATAAGTTTTTAACTCAAAGACCAA
511 GCTCAG-CCAAGAACCAATAAACAAATAAA-CCTCACATAAATAAGTTTCTAAATCAAAGACCAA
* * * * * * *
584 AAGTTGTTTACAAAATGAGAAACAATTTGGACCAAATGATGCGATTTACCAAGCATG-GAATGTT
574 AAGCTATTTACAAAATGACAAACTATTTGGACGAAAAGATGCGATTTCCCAAGCA-GAGAATGTT
* ** * * *
648 C-AAAAAATTTCTTTAAGGAATGGATCATCTTGAATACTTTAAGG-AACCGAAGTTATATAAGAA
638 CGAAAAAATTGCTCGAAGGAATGGATCATCATG-ATAATTTAAGGTAACC-AAGTTATAAAAGAA
* * * *
711 CTCGTAAAAGTTTAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAAATCTCA
701 CTCGT-AAA----AGTTTGACAAGTTCAAAAGTTCATCCAAGAACCAACAGACAAACAATTCTCA
* * * * * * * *
776 CGTAAATAAG-TTTTAATTCAAAGCCCAAAAGTTGGTTAC-AACATGATAAACTATTTTGACCAA
761 CATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAATATCACAAACTATTTAGACCAG
*
839 ATGATACGATTTCCTGAGCATGG
826 A-GAT--G-TAT-C---G-ATGG
* * * * * * * * * *
862 AATG-TTCGAGAAATTGCTGGAAGGAATGGATCGTCTAGAATACTTTAATGAACCGAACTTATAA
1 AATGTTTGGA-AAATTACTCGAAGAAATGGATCATCTTGAATACTTTAAGGAACCGAAGTCATAC
* * * * * * * *
926 AAGAGC-CTGTAAAAGTTTTACAAGTTCAGAAGTTCG-GCCAATAACAAATAAACAAACAATTGT
65 AAGAACTC-GTAAAAGTTTGACAAGTTCAGAAGTT-GTGCCAAAAACCAAGAGAGAAACAATTCT
* * * * * *
989 GACGTAAATAAGTTTTCAATTCAAAGACCAAAAGTTGTTTACAAAACCACAAACTATTTGGACCA
128 CACGTAAATAACTTTTTAATTCAAAGACCAAAAGTTATTTACAAAACGACAAACTATTTGGACAA
* *
1054 AATGATACGATTCCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
193 AATGATGCGATTACCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* * * **
1119 ACTTTAAGAAACCAAAGTAATAAAAGAACTCGTAAAAGTTTTACAAGTTCGGGTGTTCGTCCAAG
257 ACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAG
* * *
1184 AACCAAAAAAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAACAG-TTGTATGCA
322 AACCAAAAGAGAAACAATTCTCACGT-AATAAGTTTTTAATTCAAAGACCAAAAGATT-TATACA
* * * * *
1248 AAATTAAAAACTACTTGAACCA-ACTGATG-TGAT-TGTTTAGAAAATTGCTTGACGGAATGGAT
385 AAATGAAAAACTACTTGAACCAGA-TGATGCTAATAT-TCTA-AAAATTGCATGAAGGAATGGAT
* * * * *
1310 CATCTTGAAA-ACTTTAAGGAACTGAAGTTATAAAATAACTTGTAAAAGTTTAACAAGTTC-GAA
447 CATCTT-AAATACTTTAAGAAACCGAAGTTATAAAAGAAATCGTAAAAGTTTAACAAGTTCTG-A
* * ** *
1373 AGTTCAGCCAAGAACCAATAAACAAATGATTCTCACGTAAATAAGTTT-TAAATCAAAGACCAAA
510 AGCTCAGCCAAGAACCAATAAACAAATAAACCTCACATAAATAAGTTTCTAAATCAAAGACCAAA
* * * *
1437 AGCTATTTACTATATGCCAAACTATTTGGACCG-AATGATGCGATTTCCCAAGCACGA-AATGTT
575 AGCTATTTACAAAATGACAAACTATTTGGA-CGAAAAGATGCGATTTCCCAAGCA-GAGAATGTT
* * * * * * *
1500 TG-GAAAATTTCTTGAAGGAATGGATTAT-ATTGAATAATTTATGG-AACCATAGTTATCAAAGA
638 CGAAAAAATTGCTCGAAGGAATGGATCATCA-TG-ATAATTTAAGGTAACCA-AGTTATAAAAGA
* * * ** *
1562 ACTCGTAAATGTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAACAGAGAAACAATTCTCAGGTG
700 ACTCGTAAAAGTTTGACAAGTTCAAAAGTTCATCCAAGAACCAACAGACAAACAATTCTCACATA
* *
1627 AATAAG-TTTTAATTCAAAGACCAAAAGTTGTTTACAAA-ATGACAAACTATTTTGGACCA-A-A
765 AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAATATCACAAACTA-TTTAGACCAGAGA
1688 T-TAT-G-T-G
829 TGTATCGATGG
* * * *
1695 AATGTTCT-GAAAATTACTCGATA-AAATGGATCGTCTTGAATGCTTTAAGGGACCGATGTCATA
1 AATGTT-TGGAAAATTACTCGA-AGAAATGGATCATCTTGAATACTTTAAGGAACCGAAGTCATA
* * * *
1758 GAAGAACTCGTAAAAGTTTGACAAGTTCAGAAATTGTGCCAAGAACCAAGGGAGAAACAATTCTC
64 CAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTGTGCCAAAAACCAAGAGAGAAACAATTCTC
* * * *
1823 ACGTAAATAACTTTTTAAATCGAAGACCAAAAGTTTTTTACAAAACGACTAACTATTTGGACAAA
129 ACGTAAATAACTTTTTAATTCAAAGACCAAAAGTTATTTACAAAACGACAAACTATTTGGACAAA
* * * *
1888 ATGATGCGATTTCTCGAGCATGGAATGTTCGGGAAATTACTCGAAGGAATGGATCGTCTTGAATA
194 ATGATGCGATTACCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
** *
1953 CTTTAAGGAACCAAAGTTATTTAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGA
258 CTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
* * * *
2018 ACCAAGAGAGAAATAATTCTCACGTAATAAGTTTTAAATTCAAAGACCAAAAGATTTTTACAAAA
323 ACCAAAAGAGAAACAATTCTCACGTAATAAGTTTTTAATTCAAAGACCAAAAGATTTATACAAAA
* * * * *
2083 TGACAAACTATTTGGACCAGATTATGCTAATATTCTAAAAATTGCATGAAGGAATGGATCGTCTT
388 TGAAAAACTACTTGAACCAGATGATGCTAATATTCTAAAAATTGCATGAAGGAATGGATCATCTT
* * *
2148 AAATACTTTAAGAAACCGATGTTATAAAGGAAATCGTAAAAGTTTAACAAGTTCTGAAGCTCGGC
453 AAATACTTTAAGAAACCGAAGTTATAAAAGAAATCGTAAAAGTTTAACAAGTTCTGAAGCTCAGC
* * ** *
2213 CGAGAACCAATAGACAAATAAACCTCACATAAATAAGTTTCTAAATCAAAGACCAAAATTTTTTT
518 CAAGAACCAATAAACAAATAAACCTCACATAAATAAGTTTCTAAATCAAAGACCAAAAGCTATTT
* * *
2278 ACAAAATGACAAACTATTTGGATGAAAAGATGCGATTTCCCGAGCATAGAATGTTCGAAAAAATT
583 ACAAAATGACAAACTATTTGGACGAAAAGATGCGATTTCCCAAGCAGAGAATGTTCGAAAAAATT
* * * * *
2343 GCTCGAAGGAATGGATCGTCATGATACTTTAAGGTATCGAAGTTATAAAAGAACTTGTAAAAGTT
648 GCTCGAAGGAATGGATCATCATGATAATTTAAGGTAACCAAGTTATAAAAGAACTCGTAAAAGTT
* *
2408 TGACAAGTTCAGAAGTTCATCCAAGAACCAATAGACAAACAATTCTCACATAAATAAGTTTTTAA
713 TGACAAGTTCAAAAGTTCATCCAAGAACCAACAGACAAACAATTCTCACATAAATAAGTTTTTAA
* * *
2473 TTGAAAGACCAAAAGTTGTTTACAAATATCATAAACTATTTAGACCAGATGATGCGTTTCCCCGA
778 TTCAAAGACCAAAAGTTGTTTACAAATATCACAAACTATTTAGACCAGA-GAT--GTAT---CG-
2538 ACATGG
836 --ATGG
* * * * * *
2544 AATGTTTGGAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATTCC
1 AATGTTTGGAAAATTACTCGAAGAAATGGATCATCTTGAATACTTTAAGGAACCGAAGTCATACA
* * ** * * * *
2609 AGAATTCGTACAAGTTTGACAAGTTTGGAAGTT-TGTCCAAAAATCGAGAGAGAATCAAATCTCA
66 AGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTGTG-CCAAAAACCAAGAGAGAAACAATTCTCA
* *
2673 TGTAAATAACTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTGGACGAAA
130 CGTAAATAACTTTTTAATTCAAAGACCAAAAGTTATTTACAAAACGACAAACTATTTGGAC-AAA
* * ** * * *
2738 A-GATGCGATTACCTGAACATTAAATGTTCGAAAATAGCTGGAAGGAATGGATCATCTTGAATAC
194 ATGATGCGATTACCCGAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * *
2802 TTTAAGGAACCGAAGTTATCAAATAACTTGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAA
259 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAA
* *
2867 CCAACAGAGAAACAATTCTCAGGTGAATAAGTTTTTAATTCAAAGAC
324 CCAAAAGAGAAACAATTCTCACGT-AATAAGTTTTTAATTCAAAGAC
Statistics
Matches: 1698, Mismatches: 272, Indels: 149
0.80 0.13 0.07
Matches are distributed among these distances:
831 3 0.00
832 164 0.10
833 453 0.27
834 232 0.14
835 12 0.01
836 2 0.00
837 2 0.00
838 1 0.00
840 2 0.00
841 2 0.00
842 2 0.00
844 3 0.00
845 3 0.00
847 94 0.06
848 127 0.07
849 243 0.14
850 119 0.07
851 18 0.01
852 123 0.07
853 88 0.05
854 5 0.00
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.28
Consensus pattern (839 bp):
AATGTTTGGAAAATTACTCGAAGAAATGGATCATCTTGAATACTTTAAGGAACCGAAGTCATACA
AGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTGTGCCAAAAACCAAGAGAGAAACAATTCTCAC
GTAAATAACTTTTTAATTCAAAGACCAAAAGTTATTTACAAAACGACAAACTATTTGGACAAAAT
GATGCGATTACCCGAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
TAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC
AAAAGAGAAACAATTCTCACGTAATAAGTTTTTAATTCAAAGACCAAAAGATTTATACAAAATGA
AAAACTACTTGAACCAGATGATGCTAATATTCTAAAAATTGCATGAAGGAATGGATCATCTTAAA
TACTTTAAGAAACCGAAGTTATAAAAGAAATCGTAAAAGTTTAACAAGTTCTGAAGCTCAGCCAA
GAACCAATAAACAAATAAACCTCACATAAATAAGTTTCTAAATCAAAGACCAAAAGCTATTTACA
AAATGACAAACTATTTGGACGAAAAGATGCGATTTCCCAAGCAGAGAATGTTCGAAAAAATTGCT
CGAAGGAATGGATCATCATGATAATTTAAGGTAACCAAGTTATAAAAGAACTCGTAAAAGTTTGA
CAAGTTCAAAAGTTCATCCAAGAACCAACAGACAAACAATTCTCACATAAATAAGTTTTTAATTC
AAAGACCAAAAGTTGTTTACAAATATCACAAACTATTTAGACCAGAGATGTATCGATGG
Found at i:1884 original size:201 final size:200
Alignment explanation
Indices: 1494--2913 Score: 1050
Period size: 216 Copynumber: 6.8 Consensus size: 200
1484 CCAAGCACGA
* * ** * * *
1494 AATGTT-TGGAAAATTTCTTGAAGGAATGGATTATATTGAATAATTTATGGAACC-ATAGTTATC
1 AATGTTCT-GAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAT-GTTAT-
* *
1557 AAAGAACTCGTAAATGTTTGACAAGTTCA-AAAGTTCGTCCAAGAACCAACAGAGAAACAATTCT
63 AAAGAACTCGTAAAAGTTTGACAAGTTCAGAAA-TTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * *
1621 CAGGTGAATAAGTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTTGGACCA
127 CACGTAAATAAGTTTTAAATCAAAGACCAAAAGTTTTTTACAAAATGACAAACTA-TTTGGACCA
1686 AATTATG-TG
191 AATTATGCTG
* * * *
1695 AATGTTCTGAAAATTACTCGATA-AAATGGATCGTCTTGAATGCTTTAAGGGACCGATGTCATAG
1 AATGTTCTGAAAATTACTCGA-AGGAATGGATCGTCTTGAATACTTTAAGGAACCGATGTTATA-
*
1759 AAGAACTCGTAAAAGTTTGACAAGTTCAGAAATT-GTGCCAAGAACCAAGGGAGAAACAATTCTC
64 AAGAACTCGTAAAAGTTTGACAAGTTCAGAAATTCGT-CCAAGAACCAAGAGAGAAACAATTCTC
* * * * *
1823 ACGTAAATAACTTTTTAAATCGAAGACCAAAAGTTTTTTACAAAACGACTAACTATTTGGACAAA
128 ACGTAAATAA-GTTTTAAATCAAAGACCAAAAGTTTTTTACAAAATGACAAACTATTTGGACCAA
1888 ATGATGCGATTTCTCGAGCATGG
192 AT--T---A----T---GC-T-G
* * * * *
1911 AATGTTCGGGAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTTA
1 AATGTTCTGAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGATGTTA-TAA
* *
1976 AGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCAC
65 AGAACTCGTAAAAGTTTGACAAGTTCAGAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* *
2041 GT-AATAAGTTTTAAATTCAAAGACCAAAAGATTTTTACAAAATGACAAACTATTTGGACCAGAT
130 GTAAATAAGTTTTAAA-TCAAAGACCAAAAGTTTTTTACAAAATGACAAACTATTTGGACCAAAT
2105 TATGCT-
194 TATGCTG
* * * * *
2111 AATATTCTAAAAATTGCAT-GAAGGAATGGATCGTCTTAAATACTTTAAGAAACCGATGTTATAA
1 AATGTTCTGAAAATTAC-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGATGTTATAA
* * * ** * * * * * **
2175 AGGAAATCGTAAAAGTTTAACAAGTTCTGAAGCTCGGCCGAGAACCAATAGACAAATAAACCTCA
65 A-GAACTCGTAAAAGTTTGACAAGTTCAGAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * **
2240 CATAAATAAGTTTCTAAATCAAAGACCAAAATTTTTTTACAAAATGACAAACTATTTGGATGAAA
129 CGTAAATAAGTTT-TAAATCAAAGACCAAAAGTTTTTTACAAAATGACAAACTATTTGGA--CCA
*
2305 AGATGCGATTTCCCGAGCATAG
191 A-AT----TAT-----GC-T-G
* * * * *
2327 AATGTTC-GAAAAAATTGCTCGAAGGAATGGATCGTCATG-ATACTTTAAGGTATCGAAGTTATA
1 AATGTTCTG--AAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGATGTTAT-
* * * * *
2390 AAAGAACTTGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAATAGACAAACAATTCTC
63 AAAGAACTCGTAAAAGTTTGACAAGTTCAGAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * * * * *
2455 ACATAAATAAGTTTTTAATTGAAAGACCAAAAGTTGTTTACAAATATCATAAACTATTTAGACCA
128 ACGTAAATAAG-TTTTAAATCAAAGACCAAAAGTTTTTTACAAA-ATGACAAACTATTTGGACCA
*
2520 GATGATGCGTTTCCCCGAACATGG
191 -A--AT---TAT----G--C-T-G
* * * * *
2544 AATGTT-TGGAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATTC
1 AATGTTCT-GAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGATGTTA-TA
* * * ** * * * * * * *
2608 CAGAATTCGTACAAGTTTGACAAGTTTGGAAGTTTGTCCAAAAATCGAGAGAGAATCAAATCTCA
64 AAGAACTCGTAAAAGTTTGACAAGTTCAGAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * *
2673 TGTAAATAACTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTGGACGAAA
129 CGTAAATAA-GTTTTAAATCAAAGACCAAAAGTTTTTTACAAAATGACAAACTATTTGGAC---C
*
2738 AGATGCGATTACCTGAACATTA
190 A-A----ATTA--TG--C--TG
* * *
2760 AATGTTC-GAAAA-TAGCTGGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATCA
1 AATGTTCTGAAAATTA-CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGATGTTAT-A
* * * * * *
2823 AATAACTTGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAACAGAGAAACAATTCTCA
64 AAGAACTCGTAAAAGTTTGACAAGTTCAGAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * *
2888 GGTGAATAAGTTTTTAATTCAAAGAC
129 CGTAAATAAG-TTTTAAATCAAAGAC
Statistics
Matches: 990, Mismatches: 157, Indels: 130
0.78 0.12 0.10
Matches are distributed among these distances:
199 3 0.00
200 108 0.11
201 167 0.17
202 50 0.05
203 4 0.00
204 2 0.00
206 2 0.00
208 2 0.00
210 2 0.00
213 4 0.00
214 10 0.01
215 175 0.18
216 282 0.28
217 169 0.17
218 3 0.00
219 3 0.00
220 1 0.00
221 3 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (200 bp):
AATGTTCTGAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGATGTTATAAA
GAACTCGTAAAAGTTTGACAAGTTCAGAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
TAAATAAGTTTTAAATCAAAGACCAAAAGTTTTTTACAAAATGACAAACTATTTGGACCAAATTA
TGCTG
Done.