Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005823.1 Kokia drynarioides strain JFW-HI SEQ_120108, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2281
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.35


Found at i:1610 original size:30 final size:30

Alignment explanation


    Indices: 1574--1632  Score: 118
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       1564 TAAAGATTTT

                                          
       1574 CATTCATCTTCTTCAATAAGAAAAGCAAGA
          1 CATTCATCTTCTTCAATAAGAAAAGCAAGA

                                         
       1604 CATTCATCTTCTTCAATAAGAAAAGCAAG
          1 CATTCATCTTCTTCAATAAGAAAAGCAAG

       1633 GAAACCTTAA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   29  1.00

ACGTcount: A:0.42, C:0.20, G:0.10, T:0.27


Consensus pattern (30 bp):   
CATTCATCTTCTTCAATAAGAAAAGCAAGA
Done.