Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005825.1 Kokia drynarioides strain JFW-HI SEQ_120110, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11214
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36


Found at i:6509 original size:16 final size:16

Alignment explanation


    Indices: 6490--6536  Score: 51
    Period size: 16  Copynumber: 2.9  Consensus size: 16

       6480 AAATTTTAAT

                            
       6490 AAATAAAAAATATATA
          1 AAATAAAAAATATATA

                  **         
       6506 AAATTATTAAATAT-TA
          1 AAA-TAAAAAATATATA

                           
       6522 AAATAAAACAATATA
          1 AAATAAAA-AATATA

       6537 AATAATTTAA


Statistics
Matches: 24,  Mismatches: 4, Indels: 5
        0.73            0.12        0.15

Matches are distributed among these distances:
  15    3  0.12
  16   13  0.54
  17    8  0.33

ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30


Consensus pattern (16 bp):   
AAATAAAAAATATATA
Done.