Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005831.1 Kokia drynarioides strain JFW-HI SEQ_120120, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1885
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34


Found at i:1405 original size:16 final size:17

Alignment explanation


    Indices: 1384--1418  Score: 54
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       1374 TATATACGTC

                  *          
       1384 ATATTTTAT-TTTTTTT
          1 ATATTTAATATTTTTTT

                             
       1400 ATATTTAATATTTTTTT
          1 ATATTTAATATTTTTTT

              
       1417 AT
          1 AT

       1419 TTGATAAACT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  16    8  0.47
  17    9  0.53

ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74


Consensus pattern (17 bp):   
ATATTTAATATTTTTTT
Done.