Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005833.1 Kokia drynarioides strain JFW-HI SEQ_120123, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 726

Length: 1211
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:393 original size:216 final size:216

Alignment explanation


    Indices: 2--1206  Score: 1666
    Period size: 216  Copynumber: 5.6  Consensus size: 216

          1 G

                 *                                    *                  *   
          2 AAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAACAAGTTTTTAATTCAAAGAACAA
          1 AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA

                            *                  *   *          *  *           
         67 AACTTGTTTACAAAATAACAAACTATTTAGACCAAGTGACGCGATTTCCCAAGGATGGAATGTTC
         66 AACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC

                        *  **                     *        *           *     
        132 GAAAAATTGCTCTAAAAAATGGATCTTGTTGAATACTTAAGGGAACTAAAGTTAAAAAATAACTC
        131 GAAAAATTGCTCGAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAAGAACTC

                                 
        197 GTAAAAGTTCGACAAGTTCGA
        196 GTAAAAGTTCGACAAGTTCGA

                  *                                                          
        218 AAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
          1 AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA

                                                 **                          
        283 AACTTGTTTACAAAATGACAAACTATTTAGACCAAATNNTGCGATTTCCCGAGCATGGAATGTTC
         66 AACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC

                                             *                         *     
        348 GAAAAATTGCTCGAAGGAATGGATCTTGTTGAAAACTTTAGGGAACTGAAGTTAAAAAAAAACTC
        131 GAAAAATTGCTCGAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAAGAACTC

            *               *     
        413 ATAAAAGTTTC-ACAATTTCGA
        196 GTAAAAG-TTCGACAAGTTCGA

                                            *                          *     
        434 AAGTTCGTCCAAGAACAAAGAGAGAAACAATTATCACGTAAATAAGTTTTTAATTCAAAAACCAA
          1 AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA

                     *                                      *                
        499 AACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC
         66 AACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC

                                                                       *     
        564 GAAAAATTGCTCGAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTC
        131 GAAAAATTGCTCGAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAAGAACTC

            *        **    *     
        629 ATAAAAGTTTTACAATTTCGA
        196 GTAAAAGTTCGACAAGTTCGA

                                *                                            
        650 AAGTTCGTCCAAGAACAAAGTGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
          1 AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA

              *      *        *                     *       *        *       
        715 AAGTTGTTTGCAAAATGATAAACTATTTAGACCAAATGATACGATTTCTCGAGCATGAAATGTTC
         66 AACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC

                                      * *       *    *   * *       *        *
        780 GAAAAATTGCTCGAAGGAACT-GATCGTCTTGAATAATTTAAGGATCCGAAGTTAGAAAAGAACA
        131 GAAAAATTGCTCGAAGGAA-TGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAAGAACT

            *    *    *           
        844 AGTAATAGTTTGACAAGTTCGA
        195 CGTAAAAGTTCGACAAGTTCGA

                    *             *       *                                  
        866 AAGTTCGTACAA-AGACAAAGAAAGAAACACTTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
          1 AAGTTCGTCCAAGA-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA

               *         *                                          *      * 
        930 AAAGTTGTTTGA-TAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCGTGGAATAT
         65 AAACTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT

                                       * *   **       *   *  *      **       
        994 TCGAAAAATTGCTCGAAGGAATGGATCGTCTTGCTTACTTTAAGGATCTAAAGTTATGAAAGAAC
        129 TCGAAAAATTGCTCGAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAAGAAC

             *                      
       1059 TAGTAAAAGTAT-GACAAGTTCGA
        194 TCGTAAAAGT-TCGACAAGTTCGA

                                         *                             *     
       1082 AAGTTCAG-CCAAGAACAAAGAGAGAAACGATTCTCACGTAAATAAGTTTTTAATTCAACGACCA
          1 AAGTTC-GTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA

                      *     *                         *     **           
       1146 AAACTTGTTTGCAAAACGACAAACTATTTAGACCAAATGATGTGATTTTTCGAGCATGGAA
         65 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA

       1207 AATTC


Statistics
Matches: 894,  Mismatches: 85, Indels: 20
        0.89            0.09        0.02

Matches are distributed among these distances:
 215    4  0.00
 216  883  0.99
 217    7  0.01

ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27


Consensus pattern (216 bp):   
AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
AACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
GAAAAATTGCTCGAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAAGAACTC
GTAAAAGTTCGACAAGTTCGA

Done.