Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005839.1 Kokia drynarioides strain JFW-HI SEQ_120131, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 688

Length: 1147
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36


Found at i:822 original size:18 final size:17

Alignment explanation


    Indices: 790--834  Score: 56
    Period size: 17  Copynumber: 2.6  Consensus size: 17

        780 TCTCGACTTC

                              
        790 TCCTCTTTTTT-TCTTTT
          1 TCCT-TTTTTTCTCTTTT

                              
        807 TCCTTTCTTTTCTCTTTT
          1 TCCTTT-TTTTCTCTTTT

             *        
        825 TTCTTTTTTT
          1 TCCTTTTTTT

        835 GGGTGAAATT


Statistics
Matches: 25,  Mismatches: 1, Indels: 4
        0.83            0.03        0.13

Matches are distributed among these distances:
  16    2  0.08
  17   12  0.48
  18   11  0.44

ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78


Consensus pattern (17 bp):   
TCCTTTTTTTCTCTTTT
Done.