Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005840.1 Kokia drynarioides strain JFW-HI SEQ_120132, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4240
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36


Found at i:3002 original size:22 final size:23

Alignment explanation


    Indices: 2939--3002  Score: 64
    Period size: 22  Copynumber: 2.9  Consensus size: 23

       2929 TACCAATTAA

                                     
       2939 AAGATTAAATTAATT-TTT-ATTCT
          1 AAGATT-AATT-ATTATTTAATTCT

                        *  *       
       2962 AA-ATTAATTATAATATAATT-T
          1 AAGATTAATTATTATTTAATTCT

                                
       2983 AAGATTAATTATTATTTAAT
          1 AAGATTAATTATTATTTAAT

       3003 CAAATAAATT


Statistics
Matches: 34,  Mismatches: 4, Indels: 7
        0.76            0.09        0.16

Matches are distributed among these distances:
  20    2  0.06
  21    9  0.26
  22   21  0.62
  23    2  0.06

ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50


Consensus pattern (23 bp):   
AAGATTAATTATTATTTAATTCT
Done.